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Table 1 Oncomine meta-analysis of SUMO1 co-expressed genes

From: Meta-analysis of SUMO1

GENE

%

GENE NAME

SUMO1

100%

SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)

DAD1

67%

defender against cell death 1

DEK

53%

DEK oncogene (DNA binding)

UBE2N

47%

ubiquitin-conjugating enzyme E2N (UBC13 homolog, yeast)

SET

47%

SET translocation (myeloid leukemia-associated)

SLC25A5

40%

solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5

SFRS3

40%

splicing factor, arginine/serine-rich 3

RPA1

40%

replication protein A1, 70 kDa

RCN2

40%

Reticulocalbin 2, EF-hand calcium binding domain

RB1

40%

retinoblastoma 1 (including osteosarcoma)

PSMD14

40%

proteasome (prosome, macropain) 26S subunit, non-ATPase, 14

PSMC2

40%

proteasome (prosome, macropain) 26S subunit, ATPase, 2

PSMA2

40%

proteasome (prosome, macropain) subunit, alpha type, 2

NUP153

40%

nucleoporin 153 kDa

GLO1

40%

glyoxalase I

DPM1

40%

dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit

DARS

40%

Aspartyl-tRNA synthetase

CD164

40%

CD164 antigen, sialomucin

CCT8

40%

chaperonin containing TCP1, subunit 8 (theta)

BNIP2

40%

BCL2/adenovirus E1B 19 kDa interacting protein 2

YY1

33%

YY1 transcription factor

VPS16

33%

vacuolar protein sorting 16 (yeast)

USP1

33%

ubiquitin specific protease 1

UBE4A

33%

ubiquitination factor E4A (homologous to yeast UFD2)

UBE2G1

33%

ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans)

TSNAX

33%

translin-associated factor X

SSBP1

33%

single-stranded DNA-binding protein 1

SMAD4

33%

SMAD, mothers against DPP homolog 4 (Drosophila)

SIAHBP1

33%

siah binding protein 1

SEC61B

33%

Sec61 beta subunit

RIF1

33%

RAP1 interacting factor homolog (yeast)

RBMX

33%

RNA binding motif protein, X-linked

PSMA3

33%

proteasome (prosome, macropain) subunit, alpha type, 3

PPP6C

33%

protein phosphatase 6, catalytic subunit

POLD2

33%

polymerase (DNA directed), delta 2, regulatory subunit 50 kDa

NCBP2

33%

nuclear cap binding protein subunit 2, 20 kDa

IRS1

33%

insulin receptor substrate 1

ILF3

33%

interleukin enhancer binding factor 3, 90 kDa

HMGN4

33%

high mobility group nucleosomal binding domain 4

H2AFV

33%

H2A histone family, member V

G22P1

33%

thyroid autoantigen 70 kDa (Ku antigen)

EIF2S3

33%

eukaryotic translation initiation factor 2, subunit 3 gamma, 52 kDa

CUL1

33%

cullin 1

C10orf7

33%

chromosome 10 open reading frame 7

BZW1

33%

basic leucine zipper and W2 domains 1

BRD2

33%

bromodomain-containing 2

ATP6V0B

33%

ATPase, H+ transporting, lysosomal 21 kDa, V0 subunit c'

ATP5J

33%

ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F6

WEE1

27%

WEE1 homolog (S. pombe)

VBP1

27%

von Hippel-Lindau binding protein 1 (prefoldin 3)

UQCRC1

27%

ubiquinol-cytochrome c reductase core protein I

UBXD2

27%

UBX domain containing 2

TSN

27%

translin

TNIP1

27%

TNFAIP3 interacting protein 1

TEBP

27%

unactive progesterone receptor, 23 kD

TAX1BP3

27%

Tax1 (human T-cell leukemia virus type I) binding protein 3

TANK

27%

TRAF family member-associated NFKB activator

SYPL

27%

synaptophysin-like protein

SUPT6H

27%

suppressor of Ty 6 homolog (S. cerevisiae)

SUPT5H

27%

suppressor of Ty 5 homolog (S. cerevisiae)

SUCLG1

27%

succinate-CoA ligase, GDP-forming, alpha subunit

SRI

27%

sorcin

SON

27%

SON DNA binding protein

SNRPD3

27%

small nuclear ribonucleoprotein D3 polypeptide 18 kDa

SNAP23

27%

synaptosomal-associated protein, 23 kDa

SMAP

27%

small acidic protein

S100A11

27%

S100 calcium binding protein A11 (calgizzarin)

RW1

27%

RW1 protei

RSN

27%

restin (Reed-Steinberg cell-expressed intermediate filament-associated protein)

RPL36AL

27%

ribosomal protein L36a-like

RPA3

27%

replication protein A3, 14 kDa

RNF4

27%

ring finger protein 4

RBL2

27%

retinoblastoma-like 2 (p130)

RBBP4

27%

retinoblastoma binding protein 4

RARS

27%

arginyl-tRNA synthetase

RANBP2

27%

RAN binding protein 2

RAE1

27%

RAE1 RNA export 1 homolog (S. pombe)

RAB1A

27%

RAB1A, member RAS oncogene family

PXMP3

27%

peroxisomal membrane protein 3, 35 kDa (Zellweger syndrome)

PTPN12

27%

protein tyrosine phosphatase, non-receptor type 12

PTMA

27%

prothymosin, alpha (gene sequence 28)

PSMA5

27%

proteasome (prosome, macropain) subunit, alpha type, 5

PSMA4

27%

proteasome (prosome, macropain) subunit, alpha type, 4

PRKDC

27%

protein kinase, DNA-activated, catalytic polypeptide

PML

27%

promyelocytic leukemia

PHKB

27%

phosphorylase kinase, beta

NOLC1

27%

nucleolar and coiled-body phosphoprotein

MUC2

27%

mucin 2, intestinal/tracheal

MPI

27%

mannose phosphate isomerase

MGAT1

27%

mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase

MCP

27%

membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen)

MARK3

27%

MAP/microtubule affinity-regulating kinase 3

MARK2

27%

MAP/microtubule affinity-regulating kinase 2

MARCKS

27%

myristoylated alanine-rich protein kinase C substrate

MAP2K3

27%

mitogen-activated protein kinase kinase 3

LIMK2

27%

LIM domain kinase 2

LEREPO4

27%

likely ortholog of mouse immediate early response, erythropoietin 4

KPNA2

27%

karyopherin alpha 2 (RAG cohort 1, importin alpha 1)

KIAA0092

27%

translokin

IL13RA1

27%

interleukin 13 receptor, alpha 1

HSPE1

27%

heat shock 10 kDa protein 1 (chaperonin 10)

HNRPA0

27%

heterogeneous nuclear ribonucleoprotein A0

HMGN3

27%

high mobility group nucleosomal binding domain 3

HLA-A

27%

major histocompatibility complex, class I, A

HIF1A

27%

hypoxia-inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)

HAT1

27%

histone acetyltransferase 1

HADHA

27%

hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A

  

thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit

GTF3C2

27%

general transcription factor IIIC, polypeptide 2, beta 110 kDa

GRSF1

27%

G-rich RNA sequence binding factor 1

GA17

27%

dendritic cell protein

G3BP

27%

Ras-GTPase-activating protein SH3-domain-binding protein

FUBP3

27%

far upstream element (FUSE) binding protein 3

FMR1

27%

fragile × mental retardation 1

FKBP1A

27%

FK506 binding protein 1A, 12 kDa

FDFT1

27%

farnesyl-diphosphate farnesyltransferase 1

FAM3C

27%

family with sequence similarity 3, member C

EWSR1

27%

Ewing sarcoma breakpoint region 1

EPS8

27%

epidermal growth factor receptor pathway substrate 8

EIF3S9

27%

eukaryotic translation initiation factor 3, subunit 9 eta, 116 kDa

EFNA1

27%

ephrin-A1

DYRK1A

27%

dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A

DLG1

27%

DLG1

DDOST

27%

dolichyl-diphosphooligosaccharide-protein glycosyltransferase

DCTN6

27%

dynactin 6

DBI

27%

diazepam binding inhibitor (GABA receptor modulator, acyl-Coenzyme A binding)

DAZAP2

27%

DAZ associated protein 2

DAG1

27%

dystroglycan 1 (dystrophin-associated glycoprotein 1)

CUL4A

27%

cullin 4A

CSPG6

27%

chondroitin sulfate proteoglycan 6 (bamacan)

COG2

27%

component of oligomeric golgi complex 2

CEBPD

27%

CCAAT/enhancer binding protein (C/EBP), delta

CDC34

27%

cell division cycle 34

CD9

27%

CD9 antigen (p24)

CCT6A

27%

chaperonin containing TCP1, subunit 6A (zeta 1)

CBX3

27%

chromobox homolog 3 (HP1 gamma homolog, Drosophila)

CARS

27%

cysteinyl-tRNA synthetase

C1D

27%

nuclear DNA-binding protein

C14orf32

27%

chromosome 14 open reading frame 32

BUB3

27%

BUB3 budding uninhibited by benzimidazoles 3 homolog (yeast)

BSG

27%

basigin (OK blood group)

BLOC1S1

27%

biogenesis of lysosome-related organelles complex-1, subunit 1

BIRC2

27%

baculoviral IAP repeat-containing 2

ARMC2

27%

armadillo repeat containing 2

ANP32A

27%

acidic (leucine-rich) nuclear phosphoprotein 32 family, member A

  1. Oncomine meta-analysis of SUMO1 co-expressed genes at a cutoff of 27% overlap (4 studies).