Table 2 Performance evaluation of the optimized SIMT and partitioned vectorized algorithms on GTX 295
Query Sequences | Partitioned | SIMT | |||||||
|---|---|---|---|---|---|---|---|---|---|
| Â | Â | 10-2 k | 20-2 k | 40-3 k | 10-2 k | ||||
Query | Length | Time | GCUPS | Time | GCUPS | Time | GCUPS | Time | GCUPS |
P02232 | 144 | 1.19 | 17.7 | 1.13 | 18.7 | 1.09 | 19.4 | 1.02 | 20.7 |
P05013 | 189 | 1.34 | 20.7 | 1.30 | 21.4 | 1.26 | 22.1 | 1.25 | 22.3 |
P14942 | 222 | 1.49 | 22.0 | 1.41 | 23.1 | 1.38 | 23.7 | 1.37 | 23.8 |
P07327 | 375 | 2.77 | 19.9 | 2.58 | 21.4 | 2.42 | 22.8 | 2.15 | 25.7 |
P01008 | 464 | 3.04 | 22.4 | 2.82 | 24.2 | 2.66 | 25.6 | 2.54 | 26.8 |
P03435 | 567 | 3.93 | 21.2 | 3.61 | 23.1 | 3.49 | 23.9 | 3.11 | 26.8 |
P42357 | 657 | 4.29 | 22.5 | 4.02 | 24.0 | 3.87 | 25.0 | 3.56 | 27.1 |
P21177 | 729 | 4.53 | 23.7 | 4.22 | 25.4 | 4.04 | 26.5 | 3.90 | 27.5 |
Q38941 | 850 | 5.03 | 24.9 | 4.66 | 26.8 | 4.63 | 27.0 | 4.53 | 27.6 |
P27895 | 1000 | 6.58 | 22.3 | 5.87 | 25.1 | 5.38 | 27.3 | 5.21 | 28.2 |
P07756 | 1500 | 9.86 | 22.4 | 9.19 | 24.0 | 8.58 | 25.7 | 7.72 | 28.6 |
P04775 | 2005 | 12.26 | 24.1 | 11.32 | 26.0 | 10.79 | 27.3 | 10.26 | 28.7 |
P19096 | 2504 | 14.32 | 25.7 | 13.34 | 27.6 | 12.99 | 28.4 | 12.79 | 28.8 |
P28167 | 3005 | 18.31 | 24.1 | 16.46 | 26.9 | 15.56 | 28.4 | 15.33 | 28.8 |
P0C6B8 | 3564 | 21.09 | 24.9 | 19.34 | 27.1 | 17.99 | 29.1 | 18.20 | 28.8 |
P20930 | 4061 | 26.75 | 22.3 | 23.35 | 25.6 | 20.76 | 28.8 | 20.77 | 28.8 |
P08519 | 4548 | 27.36 | 24.4 | 25.11 | 26.6 | 23.92 | 28.0 | 23.24 | 28.8 |
Q7TMA5 | 4743 | 25.86 | 27.0 | 23.57 | 29.6 | 23.51 | 29.7 | 24.24 | 28.8 |
P33450 | 5147 | 32.69 | 23.2 | 30.57 | 24.8 | 27.37 | 27.7 | 26.33 | 28.7 |
Q9UKN1 | 5478 | 36.61 | 22.0 | 32.40 | 24.9 | 28.88 | 27.9 | 28.05 | 28.7 |