Table 2 Comparison of three DNA sources (native blood, WGA blood-derived DNA and WGA buccal-derived DNA) on SNP differences observed after genotyping nine dogs on the canine HD SNP array (Illumina).
Total number of dogs | Average number of SNP differences per dog | |||
|---|---|---|---|---|
Native Blood/WGA Blood | Native Blood/WGA buccal | WGABlood/WGA buccal | ||
SNP discrepancies | 9 | 21 SNPs | 37 SNPs | 20 SNPs |
Average differences between SNPs | 9 | (0.012%) | (0.020%) | 0.012% |
Average concordances between SNPs | 9 | 99.988% | 99.980% | 99.988% |
English Bull terrier | 4 | 24 SNPs | 42 SNPs | 18 SNPs |
Czechoslovakian wolf dog | 1 | 9 SNPs | 34 SNPs | 41 SNPs |
Tibetan terrier | 1 | 63 SNPs | 39 SNPs | 15 SNPs |
Yorkshire terrier | 1 | 11 SNPs | 41 SNPs | 28 SNPs |
Standard poodles | 2 | 4 SNPs | 29 SNPs | 12 SNPs |