| VTML | GONN | BL30 | BL50 | BL62 | PAM120 | PAM160 | PAM250 | BC-STR | STRM |
---|
FSM-SUP
| 50;5 | 86;1 | 120;5 | 74;6 | 63;0 | 106;3 | 110;4 | 114;3 | 67;7 | 93;0 |
FSM-TWI
| 15;2 | 20;1 | 41;3 | 21;9 | 19;4 | 36;0 | 37;1 | 35;0 | 21;4 | 24;1 |
Adaptive
FSM-SUP
| 35;6 | 70;2 | 103;7 | 50;9 | 45;3 | 90;4 | 96;4 | 98;4 | 60;14 | 73;1 |
- Matrix names are the same as in Table 1. Abbreviations: FSM-SUP - family-specific matrices tested on groups from the SUP sub-set. FSM-TWI - fold-specific matrices tested on groups from the TWI sub-set. Adaptive FSM-SUP - the adaptive family-specific matrix selection procedure tested on the groups from the SUP sub-set. The results shown are for groups with 10 or more reference alignments (244 groups in the SUP sub-set, 131 groups in the TWI sub-set). A cell formed by the intersection of row i and column j shows the results of the pair-wise comparison of matrices (i, j), and contains two numbers: first is the number of groups on which matrix i performs significantly better than j, second is the number of groups on which matrix j performs significantly better than i.