Sequence variant identity | Position on CFA17 (bp)a,b | Predicted location in gene | Nucleotide in reference databaseb | Sequence of variant | Reference SNP identity | Predicted functional effectc | Variant risk score c | Atopic dogs | Non-atopic dogs | Cross-species conservation of variant nucleotide sequenceb,d | ||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
 |  |  |  |  |  |  |  | Dog 1 | Dog 2 | Dog 3 | Dog 4 | Dog 5 | Dog 6 |  |
1 | 54759173 | UTR | C | T | rs22597162 | Transcription regulatory (score 86.5) | 1-3 | C/C | C/T | C/T | C/C | C/C | C/C | Conserved in 10/10 |
2 | 54759006 | UTR | A | del | New variant (dbSNP ss 315790492) | Transcription regulatory (score 87.7) | 1-3 | del/del | del/A | del/A | T/A | del/A | A/A | Conserved in 9/10 |
3 | 54742593 | Intronic | A | G | rs22597162 | NA | 0-2 | G/G | G/A | G/A | G/G | G/G | G/G | Not conserved |
4 | 54742027 | Intronic | A | T | rs22559551 | NA | 0-2 | T/T | T/A | T/A | A/A | T/A | A/A | Conserved in 6/10 |
5 | 54739568 | Intronic | T | C | rs22559538 | NA | No risk | T/T | C/T | C/T | C/C | C/T | C/C | Not conserved |
6 | 54739315 | Intronic | A | G | New variant (dbSNP ss 315790493) | NA | 0-2 | G/G | G/G | G/G | A/A | A/G | A/A | Not conserved |
7 | 54738923 | Intronic | G | del | New variant (dbSNP ss 15790494) | NA | No risk | del/del | del/del | del/del | del/del | del/del | del/del | NA |
8 | 54738927 | Intronic | - | A | New variant (dbSNP ss 315790495) | NA | No risk | A/A | A/A | A/A | A/A | A/A | A/A | NA |
9 | 54734456 | Intronic | T | C | rs22559532 | NA | 0-2 | C/C | C/T | C/T | C/C | C/C | C/C | Not conserved |
10 | 54734415 | Intronic | A | G | rs22559522 | NA | No risk | A/A | A/G | A/G | G/G | A/G | G/G | Conserved in 10/10 |
11 | 54717953 | Exonic | G | A | New variant (dbSNP ss 315790496) | Synonymous Splicing regulatory (score 85.4) | 1-4 | G/G | G/G | G/G | A/A | A/A | A/A | Conserved in 7/10 |
12 | 54715779 | Intronic | T | C | rs22578128 | NA | 0-2 | C/C | C/T | C/T | T/T | C/T | T/T | Conserved in 2/10 |
13 | 54709793 | Intronic (spice site) | 17-T repeat (wild) | 22-T repeat (variant) | New variant (dbSNP ss 315790497) | Alternative splicing regulatory (score 3.39) | 3-4 | variant/variant | variant/wild | variant/wild | wild/wild | variant/wild | wild/wild | Conserved in 10/10 |
14 | 54699432 | UTR | C | T | New variant (dbSNP ss 315790498) | NA | 0-2 | C/C | C/C | C/C | T/T | T/T | T/T | Not conserved |
15 | 54698793 | UTR | G | T | New variant (dbSNP ss 315790499) | NA | 1-3 | T/T | T/T | T/T | T/T | T/T | T/T | NA |
16 | 54698788 | UTR | C | T | New variant (dbSNP ss 315790500) | Transcription regulatory (score 85.4) | 1-3 | T/T | T/T | T/T | C/C | C/C | C/C | Conserved in 7/10 |
17 | 54698729 | UTR | T | C | New variant (dbSNP ss 315790501) | NA | 1-3 | C/C | C/C | C/C | C/C | C/C | C/C | NA |
18 | 54698473 | UTR | G | T | New variant (dbSNP ss 315790502) | NA | 0 | T/T | T/T | T/T | G/G | G/T | G/G | Conserved in 9/10 |