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Table 4 Main average indices in different sequencing strategies for 17 Salmonella genomes (400 bp read length, 3 kb paired end library)

From: A cost-effective and universal strategy for complete prokaryotic genomic sequencing proposed by computer simulation

ST

GCE

SBA

IDR

FLT

FDT

CN

NB

SN

6 × SE + 10 × PE

98.77307189

0.000523727

0.000125695

0

0.020605811

62

219592

17

10 × SE + 10 × PE

98.79345172

0.000439829

4.19E-05

0

0.020605811

51

224172

16

15 × SE + 10 × PE

98.71993949

0.001487248

4.19E-05

0

0.061817433

48

224247

15

20 × SE + 10 × PE

98.70417356

0.000796407

2.10E-05

0

0.061817433

48

224241

16

  1. ST: Sequencing Strategy
  2. SE: single end 454 FLX Titanium reads
  3. PE: paired end 454 FLX Titanium reads
  4. GCE: genome coverage rate of the assembly result
  5. SBA: single base accuracy rate of the assembly result
  6. IDR: indel rate of the assembly result
  7. FDT: false gene duplication rate of the assembly result
  8. CN: large contig number
  9. NB: N50 bp length of the assembly result
  10. SN: scaffold number
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BMC Research Notes

ISSN: 1756-0500

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