Prevalence of genital chlamydia infection in urban women of reproductive age, Nairobi, Kenya
© Kohli et al.; licensee BioMed Central Ltd. 2013
Received: 24 August 2012
Accepted: 24 January 2013
Published: 4 February 2013
Chlamydia trachomatis is one of the major causes of sexually transmitted infections throughout the world. Most infections are asymptomatic and remain undetected. Burden of disease in the Kenyan population is not well characterised. This study was done to define the prevalence of genital Chlamydia infection in a representative female population.
A cross-sectional study design was employed. All women attending out-patient clinics (antenatal, gynaecology, family planning) and accident and emergency departments at two study sites over a five month period were invited to consent to completion of a questionnaire and vaginal swab collection. A rapid point-of-care immunoassay based test was performed on the swabs. Women who tested positive for Chlamydia were offered treatment, together with their partner(s), and advised to come for a follow-up test.
A total of 300 women were tested. The prevalence of genital Chlamydia trachomatis was found to be 6% (95% CI 3.31% – 8.69%). The prevalence was higher in women who represented a higher socioeconomic level, but this difference was not significant (p=0.061). Use of vaginal swabs was observed to be a more acceptable form of sample collection.
The prevalence of genital Chlamydia is significant in our female population. There is a justifiable need to institute opportunistic screening programs to reduce the burden of this disease. Rapid and low cost point-of-care testing as a potential component of sexually transmitted infection (STI) screening can be utilised.
KeywordsPrevalence Chlamydia Reproductive age Vaginal swab Asymptomatic
In Kenya like in many African countries, the syndromic approach is used in the treatment of genital infections. However, this may not be entirely effective for Chlamydia trachomatis due to the asymptomatic nature of this infection in many women and the possibility of missing selected infections. Failure to detect infection can have severe consequences including ectopic pregnancy, infertility and pelvic inflammatory disease caused by fibrosis and scarring due to the repair of tissue damaged by Chlamydia induced inflammation.
With newer diagnostic methodologies available, testing is simple and less technically demanding. Rapid point-of-care diagnostic tests are particularly important in developing countries, where access to laboratories may be limited and patients are often unable or unwilling to return for test results or treatment[2, 3]. Non invasive specimen types are preferable because they overcome some of the barriers associated with the treatment of sexually transmitted infections by being more accessible to the population at risk[4–6]. In addition, it provides the opportunity to diagnose, treat and counsel during the same visit. The Chlamydia Rapid Test®, which was used as the diagnostic tool in this study, is an immunoassay based test that detects chlamydial lipopolysaccharide (LPS). This test uses vaginal swabs as the specimen type and provides a same day result. Performance evaluation indicates that this point of care test can be used for diagnosis of chlamydial infection because of its good sensitivity (83.5%), specificity (98.9%), negative and positive predictive values (98.6% and 86.7% respectively).
Treatment of infection is also effective, inexpensive and readily available and community screening programs have been instituted in some countries to control the progression of disease, prevent the transmission to current or new partner(s), and allow contact tracing, testing and treatment.
Study design and methodology
The aim of this study was to assess the public health burden of genital Chlamydia infection in sexually active females of reproductive age. A prospective cross-sectional study conducted at two hospital sites within Nairobi, Kenya was conducted. The two sites chosen represented a population with different socio-economic status.
Research and Ethics committees of both participating hospitals (Aga Khan University Research Ethics Committee and St. Mary’s Mission Hospital, Nairobi, Kenya) approved the study.
Patients were recruited over a period of five months, July to November, 2010. 150 women from each study site (a total 300 women) fulfilled the eligibility criteria (see Figure1). Women were recruited equally from the different clinics sampled.
Summary of social and demographic characteristics of patient population at the two study sites
Number of participants
Length of sexual activity
Greater than 2 lifetime Partners
Asymptomatic patients with Chlamydia infection
Acceptability of vaginal swab compared to endocervical swab
Patient knowledge about Chlamydia infection
Did not know what Chlamydia trachomatis was
Majority reported it as a sexually transmitted infection
The prevalence of infection in the study population was 6% (18/300) (95% Cl 3.31% to 8.69%). The majority of the women who tested positive were from site one, 8.67% (13/150) (95% CI 4.17% to 13.17%), while 3.33% (5/150) (95% CI 0.46% to 6.2%) were from site two.
Confidence intervals comparing age groups of patients and a positive chlamydia test
Number of participants (n=300)
Chlamydia test positive (n=18)
Frequency and confidence intervals (%)
33.3 (22.2 – 44.4)
11.1 (3.7 – 18.5)
27.8 (17.2 – 38.3)
27.8 (17.2 – 38.3)
Patients from site one were generally of a higher socioeconomic standing than those from site two; parameters used to assess this difference included patient education, monthly income and rent. More patients, 51% (76/150), from site one had a graduate education compared to 3.3% (5/150) from site two. Only 14% (21/150) of patients from site one had no income compared with 35% (53/150) from site two.
55.6% (10/18) of women with a positive Chlamydia test result were older than 20 years old at first sexual encounter. No significant difference was present when odds ratios were calculated to determine if age at sexual onset (p=0.753), duration of sexual activity (p=0.57) and number of lifetime partners (p=0.928) predisposed to genital Chlamydia infection (Table1).
77.7% (233/300) of women found the vaginal swab more acceptable than an endocervical swab. Of these, 18% (42/233) preferred collecting the sample themselves.
Patients who tested positive were counselled about the infection and offered treatment for themselves and their partner(s). One patient refused treatment. Four patients (22.2%) did not return for follow-up testing. Of the thirteen patients who returned for a follow-up testing one patient re-tested as positive. However, on repeat testing one month later the test was negative without a second dose of antibiotics.
The overall prevalence of 6% is comparable with previous published reports from Kenya, which showed varied prevalence rates of between 4.2% and 21%[9–11]. Although the target populations in those studies differed from ours, it is interesting that the prevalence rates remain similar indicating that the burden of disease has not decreased in recent times suggesting that relevant intervention strategies are still necessary.
The high prevalence noted among women of greater socioeconomic standing suggests that presence of infection in this group has been largely ignored by previous studies from this region. Our study provides new information and highlights the need to institute active opportunistic screening programs across all socioeconomic groups.
Few studies from Kenya or Africa have examined the prevalence of genital Chlamydia with reference to age unlike in the developed world, where this is the fundamental focus. Investigators have found that the prevalence of Chlamydia infection is highest in younger women especially those under the age of 25 years[12, 13]. Although this study was not sufficiently powered to determine the effects of age on prevalence rate, the prevalence rate was highest in women aged 25–30 years, 2%, emphasising that even in our population young women are at higher risk of being infected. Due to ethical concerns, our study population was aged between 18 and 45 years, excluding sexually active teenage girls, which could imply that we might have missed an age group with higher burden of infection.
In our study, 50% (150/300) of the women were older than 20 years of age at the time of first sexual encounter. Studies differ, revealing the disparities in social and sexual behaviour and cultural backgrounds between different countries[13, 14]. There was no significant difference between the age of first sexual encounter and infection with Chlamydia. The reason for this might be two-fold; first our study population did not include women younger than 18 years and second our sample size was not large enough to detect a difference in the prevalence of infection with respect to age.
Patients of a higher socioeconomic standing, with a higher prevalence of genital Chlamydia infection, had more than two lifetime partners. Our findings reiterate what other studies have shown and it is postulated that multiple partnerships may increase the likelihood of encountering a sexually transmitted pathogen through the increased probability of choosing a partner with infection, while having new or casual sexual contacts may be related to increased risk because of a reduced familiarity between partners[14, 15].
The majority of patients who tested positive for Chlamydia were asymptomatic, highlighting the inadequacy of using syndromic management in such patients. This finding reinforces the need to institute screening programs with the use of low cost and rapid point of care testing to prevent potential spread of infection in susceptible populations.
This is the first study in Kenya using a rapid point-of care diagnostic test with a non invasive vaginal swab as the specimen type enabling patients to get tested and treated within one clinic visit. The majority preferred the non invasive vaginal swab as compared to the conventional endocervical swab for specimen collection.
Rates of contraceptive use were low, possibly due to most women being married and in a monogamous relationship. Few women preferred barrier contraceptives therefore increasing their risk of becoming infected with genital Chlamydia and indeed with other sexually transmitted infections.
Most women had little or no knowledge about genital Chlamydia trachomatis as campaigns on sexually transmitted infections in this region tend to focus more on other infectious agents such as HIV, gonorrhoea and herpes simplex. The asymptomatic nature of this infection accentuates the need to educate patients about associated risk factors and available testing modalities.
Prevalence of genital Chlamydia remains significant in our population especially in women living in highly urbanised areas. This new information provides evidence for the need to implement active opportunistic screening in young sexually active women in our population in patients of all socioeconomic groups. Point of care tests can be employed for infection detection, enabling rapid screening of large numbers with provision of a same day result and treatment if required.
There is a considerable gap in current awareness about genital Chlamydia and an urgent need to prioritise patient and community education, so that young sexually active females are aware of the inherent risk factors that can predispose them to infections.
Sexually transmitted infection.
- Ohman H, Tiitinen A, Halttunen M, Paavonen J, Surcel HM: Cytokine gene polymorphism and Chlamydia trachomatis-specific immune responses. Hum Immunol. 2011, 72 (3): 278-282. 10.1016/j.humimm.2010.12.012.PubMedView ArticleGoogle Scholar
- Lourdes Mahilum-Tapay VL, Wawrzyniak JJ, Sarah A, Alison S, Penelope B, Ines U-L, Goh BT, Catherine I, Lee HH: New point of care Chlamydia Rapid Test—bridging the gap between diagnosis and treatment: performance evaluation study. BMJ. 2007, 335: 1190-1194. 10.1136/bmj.39402.463854.AE.PubMedPubMed CentralView ArticleGoogle Scholar
- Jose Paolo V, Magbanua BT, Claude-Edouard M, Aura A-A, Sarah A, Ines U-L, Catherine I, Helen L: Chlamydia trachomatis variant not detected by plasmid based nucleic acid amplification tests: molecular characterisation and failure of single dose azithromycin. Sex Transm Infect. 2007, 83: 339-343. 10.1136/sti.2007.026435.View ArticleGoogle Scholar
- Gaydos CATM, Dalesio N, Wood BJ, et al: Comparison of three nucleic acid amplification tests for detection of Chlamydia trachomatis in urine specimens. J Clin Microbiol. 2004, 42: 3041-3045. 10.1128/JCM.42.7.3041-3045.2004.PubMedPubMed CentralView ArticleGoogle Scholar
- Holland-Hall CMWH, Murray PJ: Self-collected vaginal swabs for the detection of multiple sexually transmitted infections in adolescent girls. J Pediatr Adolesc Gynecol. 2002, 15: 307-313. 10.1016/S1083-3188(02)00197-3.PubMedView ArticleGoogle Scholar
- Tanksale VS, Sahasrabhojanee M, Patel V, Nevrekar P, Menezes S, Mabey D: The reliability of a structured examination protocol and self administered vaginal swabs: a pilot study of gynaecological outpatients in Goa, India. Sex Transm Infect. 2003, 79 (3): 251-253. 10.1136/sti.79.3.251.PubMedPubMed CentralView ArticleGoogle Scholar
- Vickerman PWC, Peeling RW, et al: Modelling the cost effectiveness of rapid point of care diagnostic tests for the control of HIV and other sexually transmitted infections among female sex workers. Sex Transm Infect. 2006, 82: 403-412. 10.1136/sti.2006.020107.PubMedPubMed CentralView ArticleGoogle Scholar
- Performance of the APTIMA Combo 2 assay for detection of Chlamydia trachomatis and Neisseria gonorrhoea in female urine and endocervical swab specimens.http://www.dimensionresearch.com/resources/calculators/conf_prop.html,
- Hawken MP, Melis RDJ, Ngombo DT, Mandaliya K, Ng’ang’a LW, Price J, Dallabetta G, Temmerman M: Part time female sex workers in a suburban community in Kenya: a vulnerable hidden population. Sex Transm Infect. 2002, 78: 3041-3045.View ArticleGoogle Scholar
- Thomas T, Choudhri S, Kariuki C, Moses S: Identifying cervical infection among pregnant women in Nairobi, Kenya: limitations of risk assessment and symptom-based approaches. Genitourin Med. 1996, 72: 334-338.PubMedPubMed CentralGoogle Scholar
- Walton SMMJ: An evaluation of secondary infertility in Kenya. East Afr Med J. 1976, 53: 310-314.PubMedGoogle Scholar
- Adams EJ, Charlett A, Edmunds WJ, Hughes G: Chlamydia trachomatis in the United Kingdom: a systematic review and analysis of prevalence studies. Sex Transm Inf. 2004, 80: 1411-1416.Google Scholar
- Molano EW M, Posso H, Morré SA, Ronderos M, Franceschi S, Arslan A, Meijer CJLM, Muñoz N, van den Brule AJC: Prevalence and determinants of Chlamydia trachomatis infections in women from Bogota, Colombia. Sex Transm Inf. 2003, 79: 1947-1951.View ArticleGoogle Scholar
- Byron E, Batteiger WT, Susan O, et al: Repeated chlamydia trachomatis genital infections in adolescent women. J Infect Dis. 2009, 82: 403-412.Google Scholar
- Navarro C, Jolly A, Nair R, Chen Y: Risk factors for genital chlamydial infection. Can J Infect Dis. 2002, 13 (3): 195-207.PubMedPubMed CentralGoogle Scholar