Table 6 Alignment statistics of reads mapped against the Variola virus genome
From: False positives complicate ancient pathogen identifications using high-throughput shotgun sequencing
Platform | Sample Description | Reads Mapped (% Mapped) | Molecular Length (bp) | Total Mapped (bp) |
|---|---|---|---|---|
HeliScope | Grand Plaza Bulk 1 | 19 (0.00%) | 24.2 ± 0.5 | 459 |
Grand Plaza Bulk 2 | 28 (0.00%) | 24.7 ± 0.9 | 692 | |
Grand Plaza Phos. 1 | 11 (0.00%) | 24.3 ± 0.5 | 267 | |
Grand Plaza Phos. 2 | 14 (0.00%) | 24.6 ± 1.2 | 344 | |
Churchyard Bulk 1 | 35 (0.00%) | 24.9 ± 2.0 | 870 | |
Churchyard Bulk 2 | 30 (0.00%) | 25.7 ± 5.4 | 772 | |
Churchyard Phos. 1 | 21 (0.00%) | 25.5 ± 3.9 | 535 | |
Churchyard Phos. 2 | 28 (0.00%) | 24.8 ± 2.1 | 693 | |
Grand Plaza Sheared | 0 (0.00%) | — | 0 | |
Churchyard Sheared | 0 (0.00%) | — | 0 | |
Soil Bulk | 1 (0.00%) | 24.0 | 24 | |
Soil Sheared | 0 (0.00%) | — | 0 | |
HiSeq 2500 | TP04 | 0 (0.00%) | — | 0 |
TP09 | 0 (0.00%) | — | 0 | |
TP10 | 0 (0.00%) | — | 0 | |
TP18 | 0 (0.00%) | — | 0 | |
TP37 | 0 (0.00%) | — | 0 | |
TP48 | 0 (0.00%) | — | 0 | |
Soil Bulk | 0 (0.00%) | — | 0 |