From: RNA sequencing read depth requirement for optimal transcriptome coverage in Hevea brasiliensis
No. | Publication | Year | Sequencing method | Transcriptome type (length and number of reads) |
---|---|---|---|---|
1 | Xia et al. [55] | 2011 | PE-RNA-Seq (Illumina) | Latex and leaf combined; clone RY7-33-97 (12 mil. reads or 1 Gb approx.) |
2 | Pootakham et al. [56] | 2011 | 454 pyrosequencing (Roche) | Information not available |
3 | Triwitayakorn et al. [57] | 2011 | 454 pyrosequencing (Roche) | Shoot apical meristem; clone RRIM 600 (2 mil. reads or 676.5 Mb approx.) |
4 | Chow et al. [29] | 2012 | RNA-Seq (Illumina) | Latex; clone RRIM 600 (10 mil. reads or 350 Mb approx.) |
5 | Li et al. [58] | 2012 | PE-RNA-Seq (Illumina) | Bark; clone RY7-33-97 (30 mil. reads or 3 Gb approx.) |
6 | Duan et al. [59] | 2013 | 454 pyrosequencing (Roche) | Leaf, bark, latex, root, embryogenic tissues; clone PB 260(0.5 mil. reads or 200 Mb approx. per tissue) |
7 | Rahman et al. [60] | 2013 | PE-RNAseq (Illumina); | Leaf; clone RRIM 600 (4.89 Gb); |
454 pyrosequencing (Roche) | Leaf; clone RRIM 600 (1,085 Mb) |