Figure 1
From: Effect of diversity and missing data on genetic assignment with RAD-Seq markers
Ancestry coefficient for individuals (obtained from structure) A) with increase in number of mismatches allowed to generate loci in Stacks (default: two mismatches between reads within a locus, M2n2: two mismatches between reads within a locus and two mismatches between loci when comparing across individuals, M3n5: three mismatches between reads within a locus and five mismatches between loci when comparing across individuals, M3n7: three mismatches between reads within a locus and seven mismatches between loci when comparing across individuals and M3n5N7: three mismatches between reads within a locus and five mismatches between loci when comparing across individuals and additionally allowing seven mismatches to align secondary reads to generate a locus) and B) increasing the proportion of missing data.