From: Genetic characterisation of influenza B viruses detected in Singapore, 2004 to 2009
Primer name | 5′ Sequence 3′ | Amplicon size | Gene |
---|---|---|---|
Diagnostic Primers | |||
FluB 970 F♦ | AAATACGGTGGATTAAACAAAAGCAA | 161 bp | HA |
FluB 1131R♦ | AGCTCCGAAGAAACCCCTTTCC | ||
FluB 1004 Probe♦ | CACCCATATTGGGCAATTTCCTATGGC | ||
Sequencing Primers | |||
UniB* | AGC AGA AGC | - | All |
HA 30 F§ | CTA CTC ATG GTA GTA ACA TCC | 709 bp | HA |
HA 749R§ | YGG GAA GCC ACC AAT CTG AGA AAC | ||
HA 471 F§ | ACC TCA GGA TCT TGC CCT AAC G | 689 bp | |
HA1169R§ | TGT GTA TCC GTG CCA ACC TGC AAT | ||
HA 999 F§ | AAA GCC ATA GGA AAT TGC CCA | 841 bp | |
HA 1840R§ | TCA ATA ACG TTT CTT TGT AAT | ||
HA F⊥ | TAT TCG TCT CAG GGA GCA GAA GCA GAG CAT TTT CTA ATA TC | 1840 bp | |
HA R⊥ | ATA TCG CTC CGT ATT AGT AGT AAC AAG AGC ATT TTT C | ||
NA 21FΔ | GCT ACC TTC AAC TAT ACA AAC G | 547 bp | NA |
NA 568R§ | TAC CAT CAT GGC ATG CGG A | ||
NA 361 F§ | GCT CCC TTG ATA ATA AGG GAA CC | 477 bp | |
NA 838R§ | ATG TTC TAC TCT TCC TGT TGG | ||
NA 716 F§ | GGG GGA RAT TGT TAT CTT ATG | 789 bp | |
NA 1505R§ | TTT CAG AAA CAA TTA AKT TCA GTA AGG | ||
NA F⊥ | TAT TCG TCT CAG GGA GCA GAA GCA GAG CA | 1505 bp | |
NA R⊥ | ATA TCG CTC CGT ATT AGT AGT AAC AAG AGC ATT TT | ||
NS 376R§ | CTG GTG TTG AAG GGT AAT | - | NS |
NS 700R§ | AT CTT CTT CAT CCT CCA CTG TAA | - | |
NS F⊥ | TAT TCG TCT CAG GGA GCA GAA GCA GAG GAT TTG TTT AGT C | 1053 bp | |
NS R⊥ | ATA TCG TCT CGT ATT AGT AGT AAC AAG AGG ATT TTT AT |