Table 1 Overview of data files/data sets
From: Gene function annotations for the maize NAM founder lines
Label | Name of data file/data seta | File types (file extension) | Data repository and identifier (DOI or accession number) |
|---|---|---|---|
B73 | Carolyn_Lawrence_Dill_GOMAP_Maize_MaizeGDB_B73_NAM_5.0_October_2022_v2.r1 | Directory | CyVerse [10] (http://doi.org/10.25739/cfvb-jn16) |
B97 | Carolyn_Lawrence_Dill_GOMAP_Maize_MaizeGDB_B97_NAM_1.0_October_2022.r1 | Directory | CyVerse [11] (http://doi.org/10.25739/abf6-pa81) |
CML52 | Carolyn_Lawrence_Dill_GOMAP_Maize_MaizeGDB_CML52_NAM_1.0_November_2022.r1 | Directory | CyVerse [12] (http://doi.org/10.25739/qgb3-8743) |
CML69 | Carolyn_Lawrence_Dill_GOMAP_Maize_MaizeGDB_CML69_NAM_1.0_November_2022.r1 | Directory | CyVerse [13] (http://doi.org/10.25739/xvga-0f52) |
CML103 | Carolyn_Lawrence_Dill_GOMAP_Maize_MaizeGDB_CML103_NAM_1.0_October_2022.r1 | Directory | CyVerse [14] (http://doi.org/10.25739/1n89-rd43) |
CML228 | Carolyn_Lawrence_Dill_GOMAP_Maize_MaizeGDB_CML228_NAM_1.0_October_2022.r1 | Directory | CyVerse [15] (http://doi.org/10.25739/e6hc-0406) |
CML247 | Carolyn_Lawrence_Dill_GOMAP_Maize_MaizeGDB_CML247_NAM_1.0_October_2022.r1 | Directory | CyVerse [16] (http://doi.org/10.25739/jnwv-g571) |
CML277 | Carolyn_Lawrence_Dill_GOMAP_Maize_MaizeGDB_CML277_NAM_1.0_October_2022.r1 | Directory | CyVerse [17] (http://doi.org/10.25739/ggj0-by23) |
CML322 | Carolyn_Lawrence_Dill_GOMAP_Maize_MaizeGDB_CML322_NAM_1.0_November_2022.r1 | Directory | CyVerse [18] (http://doi.org/10.25739/36bb-f096) |
CML333 | Carolyn_Lawrence_Dill_GOMAP_Maize_MaizeGDB_CML333_NAM_1.0_November_2022.r1 | Directory | CyVerse [19] (http://doi.org/10.25739/tnhe-yr36) |
HP301 | Carolyn_Lawrence_Dill_GOMAP_Maize_MaizeGDB_HP301_NAM_1.0_November_2022.r1 | Directory | CyVerse [20] (http://doi.org/10.25739/2jhr-hy41) |
Il14H | Carolyn_Lawrence_Dill_GOMAP_Maize_MaizeGDB_Il14H_NAM_1.0_November_2022.r1 | Directory | CyVerse [21] (http://doi.org/10.25739/t500-af32) |
Ki3 | Carolyn_Lawrence_Dill_GOMAP_Maize_MaizeGDB_Ki3_NAM_1.0_November_2022.r1 | Directory | CyVerse [22] (http://doi.org/10.25739/y2t8-zp24) |
Ki11 | Carolyn_Lawrence_Dill_GOMAP_Maize_MaizeGDB_Ki11_NAM_1.0_November_2022.r1 | Directory | CyVerse [23] (http://doi.org/10.25739/thx1-dm44) |
Ky21 | Carolyn_Lawrence_Dill_GOMAP_Maize_MaizeGDB_Ky21_NAM_1.0_November_2022.r1 | Directory | CyVerse [24] (http://doi.org/10.25739/ay3t-b914) |
M37W | Carolyn_Lawrence_Dill_GOMAP_Maize_MaizeGDB_M37W_NAM_1.0_November_2022.r1 | Directory | CyVerse [25] (http://doi.org/10.25739/cgmt-s267) |
M162W | Carolyn_Lawrence_Dill_GOMAP_Maize_MaizeGDB_M162W_NAM_1.0_November_2022.r1 | Directory | CyVerse [26] (http://doi.org/10.25739/pewv-k336) |
Mo18W | Carolyn_Lawrence_Dill_GOMAP_Maize_MaizeGDB_Mo18W_NAM_1.0_November_2022.r1 | Directory | CyVerse [27] (http://doi.org/10.25739/w0zf-jc74) |
Ms71 | Carolyn_Lawrence_Dill_GOMAP_Maize_MaizeGDB_Ms71_NAM_1.0_November_2022.r1 | Directory | CyVerse [28] (http://doi.org/10.25739/9gb5-aq74) |
NC350 | Carolyn_Lawrence_Dill_GOMAP_Maize_MaizeGDB_NC350_NAM_1.0_November_2022.r1 | Directory | CyVerse [29] (http://doi.org/10.25739/q46m-qy91) |
NC358 | Carolyn_Lawrence_Dill_GOMAP_Maize_MaizeGDB_NC358_NAM_1.0_November_2022.r1 | Directory | CyVerse [30] (http://doi.org/10.25739/0w9q-ta36) |
Oh7B | Carolyn_Lawrence_Dill_GOMAP_Maize_MaizeGDB_Oh7B_NAM_1.0_November_2022.r1 | Directory | CyVerse [31] (http://doi.org/10.25739/910q-f303) |
Oh43 | Carolyn_Lawrence_Dill_GOMAP_Maize_MaizeGDB_Oh43_NAM_1.0_November_2022.r1 | Directory | CyVerse [32] (http://doi.org/10.25739/8a63-3n35) |
P39 | Carolyn_Lawrence_Dill_GOMAP_Maize_MaizeGDB_P39_NAM_1.0_November_2022.r1 | Directory | CyVerse [33] (http://doi.org/10.25739/dgda-md18) |
Tx303 | Carolyn_Lawrence_Dill_GOMAP_Maize_MaizeGDB_Tx303_NAM_1.0_November_2022.r1 | Directory | CyVerse [34] (http://doi.org/10.25739/gz5q-rw97) |
Tzi8 | Carolyn_Lawrence_Dill_GOMAP_Maize_MaizeGDB_Tzi8_NAM_1.0_November_2022.r1 | Directory | CyVerse [35] (http://doi.org/10.25739/9g8d-ny61) |
General file structure within the file for each line | README.txt | .txt | CyVerse |
/0_GOMAP-input | directory | ||
0.0_README.txt | .txt | ||
0.1_Zm-line-designation-REFERENCE-NAM-5.0_annotation.protein.fa.gz | .gz | ||
0.2_reformat.py | .py | ||
0.3_GOMAP-input.fa.gz | .gz | ||
/1_GOMAP-output | directory | ||
1.0_README.txt | .txt | ||
1.1_GOMAP-output.gaf.gz | .gaf.gz | ||
/2_cleanup | directory | ||
2.0_README.txt | .txt | ||
2.1_modify_entity_names.py | .py | ||
2.2_GOMAP-output-with-modified-entity-names.gaf.gz | .gaf.gz | ||
2.3_cleanup.py | .py | ||
/../cleanup_resources | sub-directory | ||
go.obo.gz | .obo.gz | ||
__init__.py | .py | ||
obo_parser.py | .py | ||
/3_final-result | directory | ||
3.0_README.txt | .txt | ||
3.1_Zea_mays_line-designation.MaizeGDB.CLEANED.gaf.gz | .gaf.gz |