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Table 2 Incorrect domain hits with alignment scores above domain-specific thresholds

From: Protein subfamily assignment using the Conserved Domain Database

(A) Type of incorrect hit (B) Domains with incorrect hits (C) No incorrect hits above threshold (D) With incorrect hits above threshold (E) Incorrect hits above correct domain threshold (F) Incorrect hits above hit domain threshold
None 9.0% 264 - - -
All incorrect hits 91.0% 1778 887 9.1% 25.9%
Parent/ancestor 82.0% 1838 564 9.0% 82.3%
Child/descendant 9.4% 59 215 42.8% 9.1%
Other domain in hierarchy 78.7% 1939 367 2.7% 5.5%
Domain outside hierarchy 17.3% 444 64 9.3% 29.7%
  1. (A) Classes of incorrect hits, labelled by hierarchical relationship to the specific domain. (B) Percent of domains with each type of incorrect hit to its representative sequences, among a total of 2929 domains. (C) The number of domains without incorrect hits that score above the correct domain's threshold and (D) with incorrect hits that score above the correct domain's threshold. (E) Percent of non-self hits that score above the correct domain's threshold or (F) the hit domain's threshold. In (E-F), the percent is averaged over domains with the respective class of non-self hits.