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Table 1 Primers and RT-PCR conditions

From: SR proteins and the nonsense-mediated decay mechanism are involved in human GLB1 gene alternative splicing

Primers employed in the RT-PCR

RT-PCRs performed

Primer

Sequence (5'->3')

GLB1 Exona

Transcript specificity

Pairs of primers employed

AT (°C)

C1F

ACTGCAGAGCCGGGAGGCTGGT

1

EBP/β-Gal

C1F/EBPR

58

C3R

CCAAAGTGACCTTTCCATATG

11

EBP/β-Gal

EBPF/C3R

56.5

EBPF

GGCTGAACGCCATCCAGACATT

2–5

EBP

T7/SP6

55

EBPR

TGATGTTGCTGCCTGCACTG

7–5

EBP

T7/EBPR

56.5

2_4F

ACGCCATCCAGACGGAGGAT

2–4

NN

EBPF/SP6

58

4_6F

TCCTCCGACCCAGGTTGAA

4–6

NN

2_4F/C3R

59

T7

TAATACGACTCACTATAGGG

--

pcDNA3

2_4F/SP6

58.3

SP6

GATTTAGGTGACACTATAG

--

pcDNA3

4_6F/C3R

59

C1Fm

GAGACCCCATCGTGGCGCGA

1

m EBP/β-Gal

C1Fm/C1Rm

59

C1Rm

CTCTAGTAGCCAAGCAGGTAAGC

4

m β-Gal

EBPFm/EBPRm

58

EBPFm

GGGCTGAATGCTATCCAGATAC

2–5

m EBP

  

EBPRm

TGTGATATTGTTGCCTGCACGGT

7–5

m EBP

  
  1. AT: annealing temperature; NN: not naturally ocurring; m:mouse.
  2. aGLB1 exon or exons that are complementary to the indicated primers