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Table 4 Power (with or without additional loci) for n-locus permutation distributions.

From: The effect of alternative permutation testing strategies on the performance of multifactor dimensionality reduction

Epistasis Model N-Locus Permutation Distribution Power (%)
Number of Functional Loci Minor Allele Frequency Heritability 1 Locus 2 Locus 3 Locus 4 Locus 5 Locus
2 0.2 3% 0 100 100 100 100
2 0.2 2% 0 100 95 92 89
2 0.2 1.5% 0 91 97 92 89
2 0.2 1% 0 55 80 85 74
2 0.2 0.5% 0 18 45 35 41
2 0.4 3% 0 100 97 93 86
2 0.4 2% 0 100 100 100 92
2 0.4 1.5% 0 100 100 92 80
2 0.4 1% 0 67 73 64 51
2 0.4 0.5% 0 12 40 30 28
3 0.2 3% 0 0 100 100 100
3 0.2 2% 0 0 100 100 100
3 0.2 1.5% 0 0 46 58 55
3 0.2 1% 0 0 2 24 39
3 0.2 0.5% 0 0 1 16 20
3 0.4 3% 0 0 100 100 100
3 0.4 2% 0 0 70 86 67
3 0.4 1.5% 0 0 65 65 39
3 0.4 1% 0 0 10 32 15
3 0.4 0.5% 0 0 2 12 8
4 0.2 3% 0 0 0 100 10
4 0.2 2% 0 0 0 91 10
4 0.2 1.5% 0 0 0 15 4
4 0.2 1% 0 0 0 9 4
4 0.2 0.5% 0 0 0 1 4
4 0.4 3% 0 0 0 82 11
4 0.4 2% 0 0 0 29 6
4 0.4 1.5% 0 0 0 12 4
4 0.4 1% 0 0 0 3 1
4 0.4 0.5% 0 0 0 1 0
5 0.2 3% 0 0 0 0 67
5 0.2 2% 0 0 0 0 49
5 0.2 1.5% 0 0 0 0 0
5 0.2 1% 0 0 0 0 22
5 0.2 0.5% 0 0 0 0 0
5 0.4 3% 0 0 0 0 18
5 0.4 2% 0 0 0 0 2
5 0.4 1.5% 0 0 0 0 1
5 0.4 1% 0 0 0 0 1
5 0.4 0.5% 0 0 0 0 1