Table 1 The sensitivities and specificities based on the distributions of PTM score for phosphorylated and non-phosphorylated sites in known phosphopeptides.
From: PhosCalc: A tool for evaluating the sites of peptide phosphorylation from Mass Spectrometer data
| Â | Sensitivity (%) | Specificity (%) | PTM score cut-off |
|---|---|---|---|
MS2 | 99 | 82 | 83.97 |
| Â | 95 | 82.5 | 85.98 |
| Â | 90 | 82.47 | 86.99 |
MS3 | 99 | 39 | 39.9 |
| Â | 95 | 43.5 | 56.35 |
| Â | 90 | 48 | 76.95 |