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Table 1 HTM statistical data

From: SigWin-detector: a Grid-enabled workflow for discovering enriched windows of genomic features related to DNA sequences

    

RIDGEs

anti-RIDGEs

    

all window sizes

window sizes 19–59

all window sizes

window sizes 19–59

chr

median

size

N

gw-R

chr-R

gw-R

chr-R

gw-aR

chr-aR

gw-aR

chr-aR

Y

11

57772954

96

0

28

0

9

212

0

54

0

21

15

46944323

318

0

0

0

0

6957

0

266

0

18

16

76117153

488

0

8

0

0

23329

27

521

0

13

19

114142980

553

0

2

0

0

32667

10123

853

190

4

23

191273063

1172

0

323

0

0

121113

0

5

0

6

26

170899992

1406

28327

175351

873

1803

73404

12884

223

0

8

26

146274826

1067

213

61

32

0

83720

3110

176

20

10

26

135374737

1123

165

36813

9

0

9239

611

453

379

20

26.5

62435964

738

978

1350

292

538

4171

0

7

0

2

29

242951149

1908

1801

22546

247

52

2871

376

34

2

5

29

180857866

1276

722

8875

146

303

35406

10231

298

234

3

30

199501827

1581

47644

97097

806

1491

77920

85262

123

89

X

30

154913754

893

141

946

106

694

0

3667

0

0

genome

33

3080419480

26740

1115947

767239

2511

9406

545680

554438

4832

6844

1

34

247249719

2659

165349

154517

1611

1734

68461

271099

75

88

12

34

132349534

1382

1161

541

348

492

853

1262

530

661

7

35

158821424

1273

10549

19690

615

693

3614

5125

388

479

15

36

100338915

859

232

29110

0

0

0

0

0

0

11

38

134452384

1472

225772

150844

1508

814

0

14777

0

0

9

39

140273252

1103

62730

50105

214

571

7

27055

7

3

14

39

106368585

834

817

102

170

75

210

5968

186

489

17

44

78774742

1439

67267

0

1236

0

841

72325

434

1405

16

47

88827254

1075

107253

1388

1293

82

504

15676

63

1248

22

48

49691432

580

34220

0

255

0

12

242

12

219

19

52

63811651

1445

360606

17542

2748

55

169

14618

124

1338

  1. chr: chromosome, median: median expression of all genes on a chromosome, size: chromosome size in base pairs, N: number of genes in chromosome, gw-R: number of genome-wide RIDGEs in a chromosome, chr-R: number of chromosome-specific RIDGEs in a chromosome, gw-aR: number of genome-wide anti-RIDGEs in a chromosome, chr-aR: number of chromosome-specific anti-RIDGEs in a chromosome.