Skip to main content

Table 1 HTM statistical data

From: SigWin-detector: a Grid-enabled workflow for discovering enriched windows of genomic features related to DNA sequences

     RIDGEs anti-RIDGEs
     all window sizes window sizes 19–59 all window sizes window sizes 19–59
chr median size N gw-R chr-R gw-R chr-R gw-aR chr-aR gw-aR chr-aR
Y 11 57772954 96 0 28 0 9 212 0 54 0
21 15 46944323 318 0 0 0 0 6957 0 266 0
18 16 76117153 488 0 8 0 0 23329 27 521 0
13 19 114142980 553 0 2 0 0 32667 10123 853 190
4 23 191273063 1172 0 323 0 0 121113 0 5 0
6 26 170899992 1406 28327 175351 873 1803 73404 12884 223 0
8 26 146274826 1067 213 61 32 0 83720 3110 176 20
10 26 135374737 1123 165 36813 9 0 9239 611 453 379
20 26.5 62435964 738 978 1350 292 538 4171 0 7 0
2 29 242951149 1908 1801 22546 247 52 2871 376 34 2
5 29 180857866 1276 722 8875 146 303 35406 10231 298 234
3 30 199501827 1581 47644 97097 806 1491 77920 85262 123 89
X 30 154913754 893 141 946 106 694 0 3667 0 0
genome 33 3080419480 26740 1115947 767239 2511 9406 545680 554438 4832 6844
1 34 247249719 2659 165349 154517 1611 1734 68461 271099 75 88
12 34 132349534 1382 1161 541 348 492 853 1262 530 661
7 35 158821424 1273 10549 19690 615 693 3614 5125 388 479
15 36 100338915 859 232 29110 0 0 0 0 0 0
11 38 134452384 1472 225772 150844 1508 814 0 14777 0 0
9 39 140273252 1103 62730 50105 214 571 7 27055 7 3
14 39 106368585 834 817 102 170 75 210 5968 186 489
17 44 78774742 1439 67267 0 1236 0 841 72325 434 1405
16 47 88827254 1075 107253 1388 1293 82 504 15676 63 1248
22 48 49691432 580 34220 0 255 0 12 242 12 219
19 52 63811651 1445 360606 17542 2748 55 169 14618 124 1338
  1. chr: chromosome, median: median expression of all genes on a chromosome, size: chromosome size in base pairs, N: number of genes in chromosome, gw-R: number of genome-wide RIDGEs in a chromosome, chr-R: number of chromosome-specific RIDGEs in a chromosome, gw-aR: number of genome-wide anti-RIDGEs in a chromosome, chr-aR: number of chromosome-specific anti-RIDGEs in a chromosome.
Back to article page

BMC Research Notes

ISSN: 1756-0500

Contact us