Skip to main content

Advertisement

Table 1 Percentage of probe usage after re-annotation

From: Salvaging Affymetrix probes after probe-level re-annotation

Organism GeneChip Affymetrix Brainarray [1] AffyProbe-Miner * [3] Hybrid
H. sapiens** HG-U133_Plus_2 604,258 40% 56% 94%
M. musculus Mouse430_2 496,468 49% 56% 94%
R. norvegicus Rat230_2 342,410 40% 29% 94%
B. taurus Bovine 265,627 44% 29% 93%
D. rerio Zebrafish 249,752 39% 46% 88%
  1. * Gene Consistent RefSeq plus GenBank, min. probe-set size = 5.
  2. ** GeneAnnot [2]: 58% probe usage.