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Table 1 Bovine genes discovered in the Angus dwarfism locus by BEAP (prior to bovine assembly.)

From: BEAP: The BLAST Extension and Alignment Program- a tool for contig construction and analysis of preliminary genome sequence

Gene Size1 % Similarity to Human2 % of transcript retrieved3
ANTXR2 167.52 (3551) 90.6 29.7
ANXA3 58.69 (1443) 93.3 22.9
BMP2K 102.55 (2158) 91.0 35.5
BMP3 22.61 (1774) 89.4 47.9
COPS4 40.73 (1747) 93.7 100
FGF5 24.33 (5287) 89.8 100
FRAS1 486.29 (15213) 90.8 21.2
GDEP 34.2 (521) 86.0 100
GK2 1.67 (1677) 87.9 100
HEL308 48.50 (3559) 92.9 59.1
HNRPD 20.62 (2200) 95.1 100
HPSE 42.69 (3705) 93.3 66.4
MASA 24.63 (5113) 89.7 9.2
MRPL1 89.95 (1165) 89.9 24.6
PAQR3 21.48 (3990) 92.8 90.7
PLAC8 24.7 (1391) - 0
PRDM8 24.04 (2536) 91.6 76.5
PRKG2 116.38 (3328) 94.6 100
SCD4 138.88 (1994) 90.1 100
THAP9 19.53 (3627) 90.0 13.8
  1. 1The genomic sequence, introns and exons, is given in kilobases (kbs) and the (transcript size is presented in parenthesis, in bps). All data was queried in January of 2005, prior to completion of the bovine genome. The size estimates are based on human orthologs as found at UCSC genome browser at http://genome.ucsc.edu/
  2. 2The sequence similarity between human and bovine genes was determined by comparing exonic sequence only.
  3. 3The percentage of transcript retrieved by BEAP is based on the size of the human transcript.