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Table 1 Regions of homozygous deletion in THP-1 cells.

From: High-resolution analysis of aberrant regions in autosomal chromosomes in human leukemia THP-1 cell line

No. Chr Cytoband Position Size (bp) Log2Ratio p-value Genes
23 chr3 q26.1 163997028 – 164101976 104949 -3.817441 3.54E-167  
26 chr4 q13.2 69138837 – 69166014 27178 -5.754471 1.76E-28  
28 chr4 q34.3–q35.1 182336611 – 182614113 277503 -6.675501 1.35E-175  
68 chr9 p21.3 21271776 – 22236965 965190 -5.223190 0 IFNA5, KLHL9, IFNA6, IFNA13, IFNA2, IFNA8,
IFNA1, IFNE1, MTAP, CDKN2A, CDKN2B, hsa-mir-31
78 chr10 q23.31 89654755 – 89680176 25422 -6.492464 3.11E-67 PTEN
124 chrX p11.4–p11.3 41631875 – 44807102 3175228 -5.087696 0 CASK, MAOA, MAOB, NDP, EFHC2, FUNDC1, DUSP21, UTX
140 chrX q28 153194224 – 153211806 17583 -6.345479 5.77E-25 TKTL1
  1. Numbers in the extreme left column correspond with Aberration No. in Additional file 1. Positions were based on the UCSC March 2006 human reference sequence (hg18) (NCBI build 36.1 reference sequence).