From: TIR-NBS-LRR genes are rare in monocots: evidence from diverse monocot orders
Specificity (abbreviation) | Amino acid sequence | Degenerate primer (5'-3') |
---|---|---|
Conserved P-loop/Kinase-1a (V) | GVGKTT | GGIGTIGGIAARACIAC |
P-loop/Kinase-1a TIR (I) | GIGKTT | GGIATHGGIAARACIAC |
RNBS-D TIR primer 1L (T1L) | FLHIACFF | RAARAARCAIGCDATRTGIARRAA |
RNBS-D TIR primer 1 (T1) | FLHIAC | CAIGCDATRTGIARRAA |
RNBS-D TIR primer 2 (T2) | FLHIAC | CANGCDATRTGAARRAA |
RNBS-D TIR primer 3 (T3) | FLHIAC | CANGCDATRTGCARRAA |
RNBS-D TIR primer 4 (T4) | FLHIAC | CANGCDATRTGGARRAA |
RNBS-D TIR primer 5 (T5) | FLHIAC | CANGCDATRTGTARRAA |
RNBS-D non-TIR primer 1 (nT1) | CFLYCALFPED | CYTCIGGRAAIARIGCRCARTAIARRAARC |
RNBS-D non-TIR primer 2 (nT2) | CALFPED | CYTCNGGRAANARNGCACA |
RNBS-D non-TIR primer 3 (nT3) | CALFPED | CYTCNGGRAANARNGCGCA |
Conserved GLPL primer 1 (1) | CGGLPLA | GCIARIGGIARICCICCRCA |
Conserved GLPL primer 2 (2) | CGGLPLA | GCNARNGGNARNCCNCCACA |
Conserved GLPL primer 3 (3) | CGGLPLA | GCNARNGGNARNCCNCCGCA |