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Table 1 Estimated threshold for each method by dataset, with methods sorted by the sum of absolute deviations from the GO functional similarity threshold.

From: Comparison of threshold selection methods for microarray gene co-expression matrices

Method

Anoxia

Reoxygenation

Alpha

Absolute deviations from GO threshold

GO Functional Similarity

0.97

0.92

0.85

 

Spectral Clustering

0.93

0.97 a

0.89

0.04+0.05+0.04 = 0.13

Maximal Clique-2

0.90

0.91

0.74

0.07+0.01+0.11 = 0.19

Power

0.88

0.94

0.96

0.09+0.02+0.11 = 0.22

Bonferroni adjustment

0.85

0.93

0.95

0.12+0.01+0.10 = 0.23

Control-Spot

0.93

0.83

0.70

0.04+0.09+0.15 = 0.28

Maximal Clique-3

0.87

0.89

0.60

0.10+0.03+0.25 = 0.38

Top 1 Percent

0.81

0.81

0.72

0.16+0.11+0.13 = 0.40

  1. aThresholds above the GO functional similarity threshold are in bold.