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Table 1 Estimated threshold for each method by dataset, with methods sorted by the sum of absolute deviations from the GO functional similarity threshold.

From: Comparison of threshold selection methods for microarray gene co-expression matrices

Method Anoxia Reoxygenation Alpha Absolute deviations from GO threshold
GO Functional Similarity 0.97 0.92 0.85  
Spectral Clustering 0.93 0.97 a 0.89 0.04+0.05+0.04 = 0.13
Maximal Clique-2 0.90 0.91 0.74 0.07+0.01+0.11 = 0.19
Power 0.88 0.94 0.96 0.09+0.02+0.11 = 0.22
Bonferroni adjustment 0.85 0.93 0.95 0.12+0.01+0.10 = 0.23
Control-Spot 0.93 0.83 0.70 0.04+0.09+0.15 = 0.28
Maximal Clique-3 0.87 0.89 0.60 0.10+0.03+0.25 = 0.38
Top 1 Percent 0.81 0.81 0.72 0.16+0.11+0.13 = 0.40
  1. aThresholds above the GO functional similarity threshold are in bold.