Skip to main content

Table 2 Twenty-seven SNPs listed by chromosomal location, including genotype call rates, ethnicity-specific allele frequencies, and relative difference between major allele frequency.

From: Evaluation of self-reported ethnicity in a case-control population: the stroke prevention in young women study

Marker/Alleles* Chromosome Location Call rate Major Allele Frequency-Caucasians Major Allele Frequency - African Americans Major Allele Frequency difference between Caucasians vs. African Americans, χ2 (p-value)
RS2814778 A/G 1 157441307 0.93 0.9 0.2 352.5 (0.000003)
RS6003 A/G 1 195297644 0.92 0.9 0.4 195.6 (0.000002)
RS2065160 C/T 1 203057600 0.91 0.9 0.6 85 (0.000001)
RS2752 G/T 1 232580494 0.92 0.5 0.8 68.3 (0.000001)
RS3287 A/G 2 54661161 0.93 0.7 0.4 64.5 (0.000001)
RS1824347 A/GΨ 4 174001152 0.85 0.5 0.9 120.1 (0.000001)
RS3309 A/T 5 56128536 0.95 0.7 0.6 7.9 (0.005)
RS3317 A/G 5 112240050 0.93 0.5 0.8 69.5 (0.000001)
RS877826 A/CΨ 5 138646696 0.83 0.3 0.8 156.9 (0.000002)
RS3340 A/G 5 153812060 0.91 0.8 0.9 13.4 (0.0002)
RS1928533 C/TΨ 6 45617802 0.88 0.4 0.7 60.7 (0.000001)
RS1016461 C/TΨ 6 69092970 0.85 0.5 0.8 63.2 (0.000001)
RS1538956 G/TΨ 6 127005719 0.81 0.6 0.8 29.3 (0.00001)
RS2763 C/G 7 556186 0.90 0.9 0.8 13.6 (0.0002)
RS2161 A/G 7 97930442 0.94 0.7 0.5 29.9 (0.00001)
RS2740574 A/G 7 99220032 0.92 0.9 0.4 194.7 (0.000001)
RS285 C/T 8 19859469 0.89 0.5 0.8 66.0 (0.000001)
RS1888952 C/TΨ 9 16248118 0.83 0.5 0.8 62.0 (0.000001)
RS594689 A/G 11 65392135 0.93 0.5 0.8 69.1 (0.000001)
RS1042602 A/C 11 88551344 0.90 0.6 0.9 80.0 (0.000001)
RS1800498 C/T 11 112796798 0.94 0.4 0.7 64.7 (0.000001)
RS1079598 C/T 11 112801484 0.86 0.7 0.8 8.7 (0.003)
RS5443 C/T 12 6825136 0.93 0.3 0.7 112.6 (0.000001)
RS898271 A/GΨ 13 90539922 0.81 0.5 0.7 25.2 (0.000001)
RS1800404 A/G 15 25909368 0.93 0.7 0.3 113.5 (0.000001)
RS2891 A/G 17 3652275 0.93 0.5 0.8 69.0 (0.000001)
  1. * Major allele in total combined population bolded.
  2. Ψ Indicates genotyped using TaqMan.