Skip to main content

Table 4 Region of 17q21 with summed heterozygosity score exceeding 50.

From: Markers typed in genome-wide analysis identify regions showing deviation from Hardy-Weinberg equilibrium

Marker or gene Position   Marker genotype counts
Observed
Expected
Heterozygosity scores for single, two and three marker analysis Gene description
    AA AB BB 1 2 3  
LOC339192 40652465 Start        hypothetical protein LOC339192
FMNL1 40655075 Start        formin-like 1
LOC339192 40675042 End        
FMNL1 40680468 End        
C17orf46 40687543 Start        chromosome 17 open reading frame 46
C17orf46 40695262 End        
MAP3K14 40696271 Start        mitogen-activated protein kinase kinase kinase 14
MAP3K14 40750197 End        
rs4792855 40815480   405 746 329 0.2 0.3 0.3  
    409 738 333     
rs1230094 40825939   751 622 107 0.6 0.7 0.6  
    762.1 599.9 118.1     
rs732589 40826543   762 617 101 0.7 0.6 0.5  
    774.3 592.4 113.3     
ARHGAP27 40827058 Start        Rho GTPase activating protein 27
rs1230103 40841574   753 619 108 0.5 0.5 0.2  
    762.8 599.5 117.8     
rs12947718 40848884   977 458 45 0.3 0 0  
    982.7 446.5 50.7     
ARHGAP27 40858780 End        
LOC201175 40862501 Start        hypothetical protein LOC201175
LOC201175 40867570 End        
PLEKHM1 40869049 Start        pleckstrin homology domain containing, family M (with RUN domain) member 1
rs17631303 40872185   1036 399 45 -0.2 0 -0.1  
    1031.4 408.2 40.4     
rs3946526 40897439   980 455 45 0.3 0.1 49.4  
    985.2 444.7 50.2     
rs2078200 40897617   803 573 104 0 80.1 79.7  
    802 574.9 103     
PLEKHM1 40923893 End        
LOC644354 40934084 Start        similar to Apoptosis-related protein 2 (APR-2)
LOC644354 40934428 End        
LRRC37A4 40939890 Start        leucine rich repeat containing 37, member A4 (pseudogene)
LRRC37A4 40948305 End        
rs2696639 41006823   89 1312 79 193.6 193.6 191.3  
    375 740 365     
rs2696640 41007016   88 1312 80 193.6 192 192  
    374 740 366     
rs2693363 41007205   93 1307 80 190.3 192.6 192.6  
    376.5 739.9 363.5     
rs2693364 41007294   87 1314 79 195 195 153.4  
    374 740 366     
rs2693371 41011471   87 1314 79 195 153.4 153.4  
    374 740 366     
rs17642476 41012163   1298 182 0 0.4 153.4 75.8  
    1303.6 170.8 5.6     
rs2463520 41015138   87 1314 79 195 98.8 98.8  
    374 740 366     
LOC644157 41018375 Start        similar to dead end homolog 1