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Table 1 Sequence specific oligonucleotide used for PCR-amplification of HLA-A, B*46, DRB1

From: Identification of HLA-A*02-B*46 haplotype allele variant in Guangdong Han populations on the basis of PCR-SBT

Gene Names

Primer Names

Nucleotide sequence(5'-3')

Tm°

Position

HLA-A

Aintron1F

5'-CTC TG(C/T) GGG GAG AAG CAA-3'

58

4864–4881a

 

Aex5mod R

5'-CCA GCA A(G/T)G ATG CCC ACG AT-3'

62

6735–6754a

HLA-B

BXI F

5'-GGG AGG AGC GAG GGG ACC (C/G)CA G-3'

74

5624–5645b

 

BINT R

5'-GGA GGC CAT CCC CGG CGA CCT AT-3'

78

4703–4725b

HLA-DRB1*01

DRB01F

5'-TCC CAG TGC CCG CTC CCT-3'

62

-,*

 

DRB01 R

5'-ACA CAC TCA GAT TCT CCG CTT-3'

62

-,*

HLA-DRB1*15,16

DRB02 F

5'-GGT GGG TGC TGT TGA AGG T-3'

60

-,*

 

DRB02 R

5'-ACA CAC ACA CTC AGA TTC CCA-3'

62

-,*

HLA-DRB1*03 (exclude0317), 1402, 1406, 1413

DRB03 F

5'-AGC ACT AAG GAA GGG TTC AG-3'

60

-,*

 

DRB03 R

5'-ACA CAC ACA CTC AGA TTC CCA-3'

62

-,*

HLA-DRB1*04

DRB04 F

5'-CCT GGG ATC AGA GGT AGA TTTT-3'

62

-,*

 

DRB04 R

5'-ACA CAC ACA CTC AGA TTC TCC-3'

62

-,*

HLA-DRB1*07

DRB07 F

5'-CGG CGT CGC TGT CAG TGT T-3'

62

-,*

 

DRB07 R

5'-TCA GAT TCC CAG CTC GGA GA-3'

62

-,*

HLA-DRB1*08

DRB08 F

5'-AGC GCA GGC CAG GCT CAA A T-3'

62

-,*

 

DRB08 R

5'-ACA CAC ACA CTC AGA TTC CCA-3'

62

-,*

HLA-DRB1*09

DRB09 F

5'-CAG TTA AGG TTC CAG TGC CA-3'

60

-,*

 

DRB09 R

5'-ACA CAC ACA CTC AGA TTC CCA-3'

62

-,*

HLA-DRB1*10

DRB10 F

5'-GGC GTT GCG GGT CGG CG-3'

62

-,*

 

DRB10 R

5'-ACA CAC AGA GTC AGA TTC CCA-3'

62

-,*

HLA-DRB1*03(exclude0317), 11, 13, 14

DRB11.1 F

5'-TGG TGG GCG TTG GGG CG-3'

60

-,*

 

DRB11.1 R

5'-ACA CAC ACA CTC AGA TTC CCA-3'

62

-,*

HLA-DRB1*11, 13(exclude1313), 14

DRB11.2 F

5'-AGC ACT AAG GAA GGG TTC AC-3'

60

-,*

 

DRB11.2 R

5'-TGT CAC CTC CCC ACA GAG T-3'

60

-,*

HLA-DRB1*03, 11,13(exclude1313&0317)

DRB11.3 F

5'-GTT TTC CCG CCT GGT CCC C-3'

64

-,*

 

DRB11.3 R

5'-TGT CAC CTC CCC ACA GAG T-3'

60

-,*

HLA-DRB1*12

DRB12 F

5'-AAC AGG CTG GAG GTA CGG AC-3'

64

-,*

 

DRB12 R

5'-ACA CAC ACA CTC AGA TTC CCA-3'

62

-,*

HLA-DRB1*1301,1302

DRB13.1 F

5'-GTG GGC GTT GCG GCG GC-3'

66

-,*

 

DRB13.1 R

5'-ACA CAC ACA CTC AGA TTC CCA-3'

62

-,*

HLA-DRB1*14(exclude1402, 1406, 1413)

DRB14 F

5'-GTT TTC CCG CCT GGA CCC T-3'

62

-,*

 

DRB14 R

5'-ACA CAC ACA CTC AGA TTC CCA-3'

62

-,*

HLA-DRB1*07

DRB07 F

5'-CGG CGT CGC TGT CAG TGT T-3'

62

-,*

 

DRB07 R

5'-TCA GAT TCC CAG CTC GGA GA-3'

62

-,*

HLA-DRB1*08

DRB08 F

5'-AGC GCA GGC CAG GCT CAA A T-3'

62

-,*

 

DRB08 R

5'-ACA CAC ACA CTC AGA TTC CCA-3'

62

-,*

HLA-DRB1*09

DRB09 F

5'-CAG TTA AGG TTC CAG TGC CA-3'

60

-,*

 

DRB09 R

5'-ACA CAC ACA CTC AGA TTC CCA-3'

62

-,*

HLA-DRB1*10

DRB10 F

5'-GGC GTT GCG GGT CGG CG-3'

62

-,*

 

DRB10 R

5'-ACA CAC AGA GTC AGA TTC CCA-3'

62

-,*

  1. a, Numbering of the HLA-A sequence is from the GeneBank accession NT_007952
  2. b, Numbering of the HLA-B sequence is from the GeneBank accession NT_007592
  3. *, Numbering of the HLA-DRB1 sequence is from the reference 7 and http://www.ihwg.org