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Table 1 Comparison of supported maximum query sequence length

From: CUDASW++: optimizing Smith-Waterman sequence database searches for CUDA-enabled graphics processing units

Smith-Waterman Software

Maximum Sequence Length

NCBI-BLAST [5]

Unlimited

SWPS3 [10]

10K

CBESW [12]

852

SW-CUDA [14]

2050

CUDASW++

59K