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Table 2 Performance Evaluation of CUDASW++

From: CUDASW++: optimizing Smith-Waterman sequence database searches for CUDA-enabled graphics processing units

Queries

Length

Single-GPU version

Multi-GPU version

  

Time(s)

GCUPS

Time(s)

GCUPS

P02232

144

2.33

9.039

1.97

10.660

P01111

189

3.01

9.163

2.47

11.194

P05013

189

3.01

9.163

2.40

11.513

P14942

222

3.48

9.333

2.87

11.304

P00762

246

3.82

9.402

3.10

11.591

P07327

375

5.80

9.453

4.21

13.034

P01008

464

7.08

9.582

4.67

14.532

P10635

497

7.66

9.483

4.99

14.566

P25705

553

8.61

9.390

5.49

14.711

P03435

567

8.72

9.507

5.52

15.022

P42357

657

10.11

9.496

6.50

14.777

P21177

729

11.16

9.552

7.00

15.225

Q38941

850

13.02

9.539

8.15

15.235

O60341

852

13.03

9.556

8.11

15.355

P27895

1000

15.13

9.660

9.34

15.644

P07756

1500

22.74

9.642

14.02

15.640

P04775

2005

30.37

9.649

18.48

15.855

P19096

2504

37.89

9.659

22.79

16.058

P28167

3005

45.54

9.644

27.41

16.027

P0C6B8

3564

54.01

9.644

32.45

16.055

P20930

4061

61.60

9.635

36.94

16.070

P08519

4548

68.98

9.637

41.45

16.039

Q7TMA5

4743

71.91

9.640

43.18

16.054

P33450

5147

78.13

9.629

46.83

16.066

Q9UKN1

5478

83.15

9.629

49.77

16.087