TY - JOUR AU - Long, M. AU - Betran, E. AU - Thornton, K. AU - Wang, W. PY - 2003 DA - 2003// TI - The origin of new genes: glimpses from the young and old JO - Nat Rev Genet VL - 4 UR - https://doi.org/10.1038/nrg1204 DO - 10.1038/nrg1204 ID - Long2003 ER - TY - JOUR AU - Samonte, R. V. AU - Eichler, E. E. PY - 2002 DA - 2002// TI - Segmental duplications and the evolution of the primate genome JO - Nat Rev Genet VL - 3 UR - https://doi.org/10.1038/nrg705 DO - 10.1038/nrg705 ID - Samonte2002 ER - TY - CHAP AU - Ohno, S. PY - 1970 DA - 1970// BT - Evolution by Gene Duplication PB - Springer CY - Berlin UR - https://doi.org/10.1007/978-3-642-86659-3 DO - 10.1007/978-3-642-86659-3 ID - Ohno1970 ER - TY - JOUR AU - Enright, A. J. AU - Iliopoulos, I. AU - Kyrpides, N. C. AU - Ouzounis, C. A. PY - 1999 DA - 1999// TI - Protein interaction maps for complete genomes based on gene fusion events JO - Nature VL - 402 UR - https://doi.org/10.1038/47056 DO - 10.1038/47056 ID - Enright1999 ER - TY - JOUR AU - Akiva, P. AU - Toporik, A. AU - Edelheit, S. AU - Peretz, Y. AU - Diber, A. AU - Shemesh, R. AU - Novik, A. AU - Sorek, R. PY - 2006 DA - 2006// TI - Transcription-mediated gene fusion in the human genome JO - Genome Res VL - 16 UR - https://doi.org/10.1101/gr.4137606 DO - 10.1101/gr.4137606 ID - Akiva2006 ER - TY - JOUR AU - Enright, A. J. AU - Van Dongen, S. AU - Ouzounis, C. A. PY - 2002 DA - 2002// TI - An efficient algorithm for large-scale detection of protein families JO - Nucleic Acids Res VL - 30 UR - https://doi.org/10.1093/nar/30.7.1575 DO - 10.1093/nar/30.7.1575 ID - Enright2002 ER - TY - JOUR AU - Marcotte, E. M. AU - Pellegrini, M. AU - Ng, H. L. AU - Rice, D. W. AU - Yeates, T. O. AU - Eisenberg, D. PY - 1999 DA - 1999// TI - Detecting protein function and protein-protein interactions from genome sequences JO - Science VL - 285 UR - https://doi.org/10.1126/science.285.5428.751 DO - 10.1126/science.285.5428.751 ID - Marcotte1999 ER - TY - JOUR AU - Yanai, I. AU - Wolf, Y. I. AU - Koonin, E. V. PY - 2002 DA - 2002// TI - Evolution of gene fusions: horizontal transfer versus independent events JO - Genome Biol VL - 3 UR - https://doi.org/10.1186/gb-2002-3-5-research0024 DO - 10.1186/gb-2002-3-5-research0024 ID - Yanai2002 ER - TY - JOUR AU - Wang, W. AU - Yu, H. AU - Long, M. PY - 2004 DA - 2004// TI - Duplication-degeneration as a mechanism of gene fission and the origin of new genes in Drosophila species JO - Nature genetics VL - 36 UR - https://doi.org/10.1038/ng1338 DO - 10.1038/ng1338 ID - Wang2004 ER - TY - JOUR AU - Zhang, Z. AU - Sun, H. AU - Zhang, Y. AU - Zhao, Y. AU - Shi, B. AU - Sun, S. AU - Lu, H. AU - Bu, D. AU - Ling, L. AU - Chen, R. PY - 2006 DA - 2006// TI - Genome-wide analysis of mammalian DNA segment fusion/fission JO - Journal of theoretical biology VL - 240 UR - https://doi.org/10.1016/j.jtbi.2005.09.016 DO - 10.1016/j.jtbi.2005.09.016 ID - Zhang2006 ER - TY - JOUR AU - Nurminsky, D. I. AU - Nurminskaya, M. V. AU - De Aguiar, D. AU - Hartl, D. L. PY - 1998 DA - 1998// TI - Selective sweep of a newly evolved sperm-specific gene in Drosophila JO - Nature VL - 396 UR - https://doi.org/10.1038/25126 DO - 10.1038/25126 ID - Nurminsky1998 ER - TY - JOUR AU - Snel, B. AU - Bork, P. AU - Huynen, M. PY - 2000 DA - 2000// TI - Genome evolution. Gene fusion versus gene fission JO - Trends Genet VL - 16 UR - https://doi.org/10.1016/S0168-9525(99)01924-1 DO - 10.1016/S0168-9525(99)01924-1 ID - Snel2000 ER - TY - STD TI - Andreeva A, Howorth D, Brenner SE, Hubbard TJ, Chothia C, Murzin AG: SCOP database in 2004: refinements integrate structure and sequence family data. Nucleic Acids Res. 2004, D226-229. 10.1093/nar/gkh039. 35 Database ID - ref13 ER - TY - STD TI - Bateman A, Coin L, Durbin R, Finn RD, Hollich V, Griffiths-Jones S, Khanna A, Marshall M, Moxon S, Sonnhammer EL: The Pfam protein families database. Nucleic Acids Res. 2004, D138-141. 10.1093/nar/gkh121. 32 Database ID - ref14 ER - TY - JOUR AU - Bornberg-Bauer, E. AU - Beaussart, F. AU - Kummerfeld, S. K. AU - Teichmann, S. A. AU - Weiner, J. PY - 2005 DA - 2005// TI - The evolution of domain arrangements in proteins and interaction networks JO - Cell Mol Life Sci VL - 62 UR - https://doi.org/10.1007/s00018-004-4416-1 DO - 10.1007/s00018-004-4416-1 ID - Bornberg-Bauer2005 ER - TY - JOUR AU - Orengo, C. A. AU - Thornton, J. M. PY - 2005 DA - 2005// TI - Protein families and their evolution-a structural perspective JO - Annu Rev Biochem VL - 74 UR - https://doi.org/10.1146/annurev.biochem.74.082803.133029 DO - 10.1146/annurev.biochem.74.082803.133029 ID - Orengo2005 ER - TY - JOUR AU - Patthy, L. PY - 2003 DA - 2003// TI - Modular assembly of genes and the evolution of new functions JO - Genetica VL - 118 UR - https://doi.org/10.1023/A:1024182432483 DO - 10.1023/A:1024182432483 ID - Patthy2003 ER - TY - JOUR AU - Koonin, E. V. AU - Wolf, Y. I. AU - Karev, G. P. PY - 2002 DA - 2002// TI - The structure of the protein universe and genome evolution JO - Nature VL - 420 UR - https://doi.org/10.1038/nature01256 DO - 10.1038/nature01256 ID - Koonin2002 ER - TY - JOUR AU - Vogel, C. AU - Berzuini, C. AU - Bashton, M. AU - Gough, J. AU - Teichmann, S. A. PY - 2004 DA - 2004// TI - Supra-domains: evolutionary units larger than single protein domains JO - J Mol Biol VL - 336 UR - https://doi.org/10.1016/j.jmb.2003.12.026 DO - 10.1016/j.jmb.2003.12.026 ID - Vogel2004 ER - TY - JOUR AU - Doolittle, R. F. PY - 1995 DA - 1995// TI - The multiplicity of domains in proteins JO - Annu Rev Biochem VL - 64 UR - https://doi.org/10.1146/annurev.bi.64.070195.001443 DO - 10.1146/annurev.bi.64.070195.001443 ID - Doolittle1995 ER - TY - JOUR AU - Vogel, C. AU - Bashton, M. AU - Kerrison, N. D. AU - Chothia, C. AU - Teichmann, S. A. PY - 2004 DA - 2004// TI - Structure, function and evolution of multidomain proteins JO - Curr Opin Struct Biol VL - 14 UR - https://doi.org/10.1016/j.sbi.2004.03.011 DO - 10.1016/j.sbi.2004.03.011 ID - Vogel2004 ER - TY - JOUR AU - Enright, A. J. AU - Ouzounis, C. A. PY - 2001 DA - 2001// TI - Functional associations of proteins in entire genomes by means of exhaustive detection of gene fusions JO - Genome Biol VL - 2 UR - https://doi.org/10.1186/gb-2001-2-9-research0034 DO - 10.1186/gb-2001-2-9-research0034 ID - Enright2001 ER - TY - JOUR AU - Pasek, S. AU - Risler, J. L. AU - Brezellec, P. PY - 2006 DA - 2006// TI - Gene fusion/fission is a major contributor to evolution of multi-domain bacterial proteins JO - Bioinformatics VL - 22 UR - https://doi.org/10.1093/bioinformatics/btl135 DO - 10.1093/bioinformatics/btl135 ID - Pasek2006 ER - TY - JOUR AU - Skrabanek, L. AU - Saini, H. K. AU - Bader, G. D. AU - Enright, A. J. PY - 2008 DA - 2008// TI - Computational prediction of protein-protein interactions JO - Mol Biotechnol VL - 38 UR - https://doi.org/10.1007/s12033-007-0069-2 DO - 10.1007/s12033-007-0069-2 ID - Skrabanek2008 ER - TY - JOUR AU - Apic, G. AU - Gough, J. AU - Teichmann, S. A. PY - 2001 DA - 2001// TI - Domain combinations in archaeal, eubacterial and eukaryotic proteomes JO - J Mol Biol VL - 310 UR - https://doi.org/10.1006/jmbi.2001.4776 DO - 10.1006/jmbi.2001.4776 ID - Apic2001 ER - TY - JOUR AU - Gabaldon, T. AU - Huynen, M. A. PY - 2004 DA - 2004// TI - Prediction of protein function and pathways in the genome era JO - Cell Mol Life Sci VL - 61 UR - https://doi.org/10.1007/s00018-003-3387-y DO - 10.1007/s00018-003-3387-y ID - Gabaldon2004 ER - TY - JOUR AU - Hoglund, M. AU - Frigyesi, A. AU - Mitelman, F. PY - 2006 DA - 2006// TI - A gene fusion network in human neoplasia JO - Oncogene VL - 25 UR - https://doi.org/10.1038/sj.onc.1209290 DO - 10.1038/sj.onc.1209290 ID - Hoglund2006 ER - TY - JOUR AU - Prachumwat, A. AU - Li, W. H. PY - 2006 DA - 2006// TI - Protein function, connectivity, and duplicability in yeast JO - Mol Biol Evol VL - 23 UR - https://doi.org/10.1093/molbev/msi249 DO - 10.1093/molbev/msi249 ID - Prachumwat2006 ER - TY - JOUR AU - Bader, J. S. AU - Chaudhuri, A. AU - Rothberg, J. M. AU - Chant, J. PY - 2004 DA - 2004// TI - Gaining confidence in high-throughput protein interaction networks JO - Nature biotechnology VL - 22 UR - https://doi.org/10.1038/nbt924 DO - 10.1038/nbt924 ID - Bader2004 ER -