TY - JOUR AU - Higgins, D. G. AU - Thompson, J. D. AU - Gibson, T. J. PY - 1996 DA - 1996// TI - Using CLUSTAL for multiple sequence alignments JO - Methods Enzymol VL - 266 UR - https://doi.org/10.1016/S0076-6879(96)66024-8 DO - 10.1016/S0076-6879(96)66024-8 ID - Higgins1996 ER - TY - JOUR AU - Jeanmougin, F. AU - Thompson, J. D. AU - Gouy, M. AU - Higgins, D. G. AU - Gibson, T. J. PY - 1998 DA - 1998// TI - Multiple sequence alignment with Clustal X JO - Trends Biochem Sci VL - 23 UR - https://doi.org/10.1016/S0968-0004(98)01285-7 DO - 10.1016/S0968-0004(98)01285-7 ID - Jeanmougin1998 ER - TY - JOUR AU - Notredame, C. AU - Higgins, D. G. AU - Heringa, J. PY - 2000 DA - 2000// TI - T-Coffee: A novel method for fast and accurate multiple sequence alignment JO - J Mol Biol VL - 302 UR - https://doi.org/10.1006/jmbi.2000.4042 DO - 10.1006/jmbi.2000.4042 ID - Notredame2000 ER - TY - JOUR AU - Edgar, R. C. PY - 2004 DA - 2004// TI - MUSCLE: multiple sequence alignment with high accuracy and high throughput JO - Nucleic Acids Res VL - 32 UR - https://doi.org/10.1093/nar/gkh340 DO - 10.1093/nar/gkh340 ID - Edgar2004 ER - TY - CHAP AU - Clamp, M. E. AU - Cuff, J. A. AU - Barton, G. J. PY - 1999 DA - 1999// BT - Jalview – a java multiple sequence alignment viewer and editor ID - Clamp1999 ER - TY - JOUR AU - Clamp, M. AU - Cuff, J. AU - Searle, S. M. AU - Barton, G. J. PY - 2004 DA - 2004// TI - The Jalview Java alignment editor JO - Bioinformatics VL - 20 UR - https://doi.org/10.1093/bioinformatics/btg430 DO - 10.1093/bioinformatics/btg430 ID - Clamp2004 ER - TY - JOUR AU - Brodie, R. AU - Smith, A. J. AU - Roper, R. L. AU - Tcherepanov, V. AU - Upton, C. PY - 2004 DA - 2004// TI - Base-By-Base: single nucleotide-level analysis of whole viral genome alignments JO - BMC Bioinformatics VL - 5 UR - https://doi.org/10.1186/1471-2105-5-96 DO - 10.1186/1471-2105-5-96 ID - Brodie2004 ER - TY - JOUR AU - Delcher, A. L. AU - Salzberg, S. L. AU - Phillippy, A. M. PY - 2003 DA - 2003// TI - Using MUMmer to identify similar regions in large sequence sets JO - Curr Protoc Bioinformatics VL - Chapter 10 ID - Delcher2003 ER - TY - STD TI - Brudno M, Poliakov A, Minovitsky S, Ratnere I, Dubchak I: Multiple whole genome alignments and novel biomedical applications at the VISTA portal. Nucleic Acids Res. 2007, W669-674. 35 Web Server ID - ref9 ER - TY - JOUR AU - Stajich, J. E. AU - Block, D. AU - Boulez, K. AU - Brenner, S. E. AU - Chervitz, S. A. AU - Dagdigian, C. AU - Fuellen, G. AU - Gilbert, J. G. AU - Korf, I. AU - Lapp, H. PY - 2002 DA - 2002// TI - The Bioperl toolkit: Perl modules for the life sciences JO - Genome Res VL - 12 UR - https://doi.org/10.1101/gr.361602 DO - 10.1101/gr.361602 ID - Stajich2002 ER - TY - JOUR AU - Rice, P. AU - Longden, I. AU - Bleasby, A. PY - 2000 DA - 2000// TI - EMBOSS: the European Molecular Biology Open Software Suite JO - Trends Genet VL - 16 UR - https://doi.org/10.1016/S0168-9525(00)02024-2 DO - 10.1016/S0168-9525(00)02024-2 ID - Rice2000 ER - TY - JOUR AU - Needleman, S. B. AU - Wunsch, C. D. PY - 1970 DA - 1970// TI - A general method applicable to the search for similarities in the amino acid sequence of two proteins JO - J Mol Biol VL - 48 UR - https://doi.org/10.1016/0022-2836(70)90057-4 DO - 10.1016/0022-2836(70)90057-4 ID - Needleman1970 ER -