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Table 2 Example KISSa alignments. Number of differences refers to the total number of insertions and deletions in all sequences.

From: KISSa: a strategy to build multiple sequence alignments from pairwise comparisons of very closely related sequences

Genotypes

# of Seqs

Time for KISSa MSA (secs)

Number of differences

DENV 1

528

3.970

8 deletions, 4 insertions

DENV 2

558

0.284

3 deletions

DENV 3

236

0.697

1 insertion

DENV 4

31

0.164

3 deletions

DENV 1,2

1086

10.607

1127 deletions, 562 insertions

DENV 1,2,3

1322

20.289

1599 deletions, 1035 insertions

DENV 1,2,3,4

1354

25.022

1755 deletions, 1129 insertions