Table 1 False positive rate of different methods on a null simulation.
| Â | False positive rate | ||||
|---|---|---|---|---|---|
| Â | Â | Â | Â | AntEpiSeeker | |
P value threshold | Exhaustive search | BEAM | SNPHarvester | Before minimizing false positives | After minimizing false positives |
10-5 | 5.5 × 10-6 | No positives reported | 1.4 × 10-2 | 3.5 × 10-6 | 3.0 × 10-6 |
10-4 | 5.3 × 10-5 | No positives reported | 1.6 × 10-2 | 3.0 × 10-5 | 1.1 × 10-5 |
10-3 | 6.9 × 10-4 | No positives reported | 2.0 × 10-2 | 2.9 × 10-4 | 3.7 × 10-5 |
10-2 | 8.4 × 10-3 | No positives reported | 2.4 × 10-2 | 2.0 × 10-3 | 6.6 × 10-5 |