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Table 1 Gene information on experimental verified splice variants.

From: A study of alternative splicing in the pig

  Gene Tissue-specificity
No. Symbol Name Function EST qPCR P -value
4 IGF2 insulin-like growth factor 2 (somatomedin A) Cell proliferation Liver Liver 5.5 × 10-27
7 EIF4E2 eukaryotic translation initiation factor 4E family member 2 Translation Intestine Intestine/lymph 2.6 × 10-44
14 RBM4 RNA binding motif protein 4 Transcription Thymus
Brain
Brain* 7.2 × 10-36
1.9 × 10-9
15 ANAPC11 anaphase promoting complex subunit 11 homolog (yeast) Cell cycle Muscle, Lymph - Brain - Intestine Liver 9.7 × 10-5
27 ATP5S ATP synthase, H+ trans-porting, mitochondrial F0 complex, subunit s (factor B) Ion transporter Muscle Muscle 5.7 × 10-18
28 HNRPLL heterogeneous nuclear ribonucleoprotein L-like RNA processing Brain Brain* 1.0 × 10-21
41 PPP3CC protein phosphatase 3 (formerly 2B), catalytic subunit, gamma isoform Phophatase Brain Muscle* 2.1 × 10-42
71 CEP27 centrosomal protein 27 kDa Centrosome Brain Brain 7.8 × 10-18
3.3 × 10-15
85 BSCL2 Bernardinelli-Seip congenital lipodystrophy 2 (seipin) unknown Ovary Ovary* 1.7 × 10-30
97 AUH AU RNA binding protein/enoyl-Coenzyme A hydratase RNA catabolism Heart Heart*
Ovary
2.0 × 10-19
4.0 × 10-16
  1. No. refers to the ranking on the predicted tissue-specific list (Additional File 2). Tissue specificity is listed both in regard to the in silico predictions (manual inspection of EST data) and in regard to the experimental verifications (qPCR). The P-value is referring to the ANOVA results. Tissues marked with * are not exclusive tissue-specific but tissue-specific ratios between the splice variants have been detected.