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Table 2 Sub-cluster names (from the PigEST database) and primer sequences of experimentally verified splice variants.

From: A study of alternative splicing in the pig

Gene symbol

Sub-cluster name

Forward primer (5'→3')

Reverse primer (5'→3')

Amplicon length (bp)

IGF2

Ss1.1-Utr1-UTR01C050081.5SS

AGCCCACAGCGATTCCAA

AGTCTCACTGGGGCGGTAAG

110

 

Ss1.1-Liv1-LVR010049B06.5SS

CCGGCTTCCAGATTCCAA

AGTCTCACTGGGGCGGTAAG

143

EIF4E2

Ss1.1-Pig3-SRG8020J01.3SS

CCGGTTTCAGGAGGACATTA

GAAAGCTTGAATTGTCCTTGATG

164

 

Ss1.1-Tes1-TES01A030013.5S

CCGGTTTCAGGAGGACATTA

ACTCCTCCCAGGCCTTGAT

161

RBM4

Ss1.1-Lng1-LNG010007H10.5SS

TCGGCATTGCGCGGCTGT

CTCGAACAGTGAGCGGATCT

94

 

Ss1.1-Utr1-UTR010079B01.5S

GATTTTCGTGCGGGCTGT

CTCGAACAGTGAGCGGATCT

94

 

Ss1.1-Lng1-LNG010007H10.5SS

CATCAGAGGCCTTGACAACA

CGGCAACAGGTGTCGATAG

101

 

.1-Thy1-THY010092E11.5SS

TCGTGAAAGATTATGCCTTCG

CACACACATCCCACCTTGAA

101

 

Ss1.1-Utr1-UTR010079B01.5SS

TCGTGAAAGATTATGCCTTCG

CTCTTTCCCGCACCGATAGC

124

ANAPC11

Ss1.1-Pig4-TMW8023A04.5SS

GTGGGCCTTGCAGGAGTT

GAGCCACTTGAGGATGCAGT

246

 

Ss1.1-rnca27b_a11.5S

CCGCGGTCGTTTATATACCT

GAGCCACTTGAGGATGCAGT

276

 

Ss1.1-Pig3-SRG8012J07.3S

TGGCTCCCAAGTGCTGTAG

GAGCCACTTGAGGATGCAGT

267

ATP5S

Ss1.1-ruio31_j9.5SS

TCCCTTCGACGCTATCAAAT

GATGCGTTCATGATCCACTTT

144

 

Ss1.1-Mixn-0026b16.5SS

ACCAAGTGGCAAATCAAATG

GATGCGTTCATGATCCACTTT

143

HNRPLL

Ss1.1-rret19_c4.5S

GATAAGAGTTCCCAATGGTTCC

GGTAAACAAATTCTAACATGCTCTTC

101

 

Ss1.1-rpbfe0126_n23.5S

TGAAAGTTTGATGAAGGGAACT

GGTAAACAAATTCTAACATGCTCTTC

136

PPP3CC

Ss1.1-LyN1-MLN01A040100.5

GATGAAATTGAAGGAGGCACT

TCCCGAAGAATTGAAAAGACC

98

 

Ss1.1-Mixn-0001e03.5S

AAGCTATCAGAAAGGAGGCACT

TCCCGAAGAATTGAAAAGACC

99

CEP27

1Ss1.1-Liv1-LVRM10031B03.5SS

CTAAAGAAAATGAGCACAGC

TCTGTTGTTCTCGCCACTTG

97

 

2Ss1.1-rsug28_c19.5S

GCTGTTTATCACAGAGCACAGC

TCTGTTGTTCTCGCCACTTG

99

 

3Ss1.1-Pig4-TMW8033B03.3S

CCTTCATTTTTGGAGCACAG

TCTGTTGTTCTCGCCACTTG

98

BSCL2

Ss1.1-Thy1-THY010012C06.5

GGTGTGCAGAGACCAGATCA

GGTTCAGGCCTTGAGTTCCT

117

 

Ss1.1-Spl1-SPL010003H07.5S

GCTGCTCGCTCTGAGTCC

GGTTCAGGCCTTGAGTTCCT

111

AUH

Ss1.1-Ova1-OVR010018B04.5SS

CTACAGCTCTGAGGCGAAGA

CACCACAATTCCTCGGTTCT

76

 

Ss1.1-Liv1-LVR010068B01.5S

GGCAATTATTCCTGGTGGAG

TCAAATGTTGCCTTTTCAGC

107

 

Ss1.1-Pig3-SRG8009K09.3S

TGTCTCCTGTGCTGCAGTATG

TGTGTGAGGGTACATGTGTGAA

108