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Table 1 Characteristics of microsatellite loci isolated from M. acuminata Calcutta 4 and polymorphic across 21 M. acuminata accessions.

From: Characterization of novel microsatellite markers in Musa acuminata subsp. burmannicoides, var. Calcutta 4

Locus name

BAC consensus sequence ID

GenBank Accession no.

Repeat Array

Primer Sequence (5' - 3')

Obtained allele size range (bp)

Tm(oC) used

N a

H E

H O

HWE P value

PIC

MABN01

MA4_008L021

AC186748

(AG)12

F: CCACTGAAGCTGAAAGGAGG

500-540

56

3

0.667828

0.875000

0.021000*

0.577

    

R: GGATTGTAGGTGACGGGAGA

 

56

     

MABN03

MA4_008L021

AC186748

(TG)10

F: TGGTTGTATGTTTGCTGGGA

500-545

60

3

0.593590

0.850000

0.013500*

0.504

    

R: CAAAGTGCTGGCATGAGAAA

 

60

     

MABN06

MA4_008L021

AC186748

(ATAC)3

F: GCAACCATCAACCAAAAACC

344-360

58

3

0.444872

0.200000

0.013500*

0.365

    

R: TTTGCAAGAAAATCGTGCTG

 

58

     

MABN07

MA4_008L021

AC186748

(ATA)6

F: TTTTGATCATCATATGGGTCG

500-540

60

2

0.344948

0.428571

0.512000

0.258

    

R: AGAGGGAGAGCCAAAGTGGT

 

60

     

MABN08

MA4_008L021

AC186748

(GA)13

F: TTACCGTAAACGGAGCCAAC

260-290

58

3

0.637631

1.000000

0.000000*

0.544

    

R: GAAATCGAGGAAAACCGACA

 

58

     

MABN13

MA4_111B014

AC186954

(CA)6

F: CCTCAACGAAGCATACAGCA

210-240

58

2

0.450980

0.647059

0.106500

0.351

    

R: CAGTCTGGGCTGACACAGAA

 

58

     

MABN15

MA4_111B014

AC186954

(ATTTT)3

F: CCAACTTCCATTTGGCTTTT

490-520

58

2

0.315912

0.380952

1.000000

0.258

    

R: CGCAGGCGACTTCTTACAGT

 

58

     

MABN17

MA4_111B014

AC186954

(TCT)14

F: CCCATGCAACTACAACAACG

200-245

60

4

0.732804

1.000000

0.125000

0.659

    

R: GGAACCACGTGTCCTGATCT

 

60

     

MABN19

MA4_106O017

AC186747

(TTTAT)3

F: CTCCACCGCTGCAAATTAT

330-380

60

4

0.750794

0.944444

0.003000*

0.681

    

R: TTCATTTGATTGGAAAGTGGAA

 

60

     

MABN20

MA4_106O017

AC186747

(AC)7

F: AAGAAGTGCAACAGATGGGC

344-380

56

3

0.537179

0.550000

0.727500

0.454

    

R: GCCAAAGGAATCATGCTGTT

 

56

     

MABN22

MA4_106O017

AC186747

(AG)6

F: GTCGCAGAGATCAAGGAACC

490-510

58

2

0.507549

0.619048

0.392000

0.373

    

R: GGACCTCCTATGTTTGCTGC

 

58

     

MABN23

MA4_106O017

AC186747

(TTA)4

F: TCGATCATTTGGCATCACAT

350-500

60

4

0.723577

0.952381

0.015500*

0.641

    

R: CCAGGTAGCGAAGACGAGAC

 

60

     

MABN25

MA4_106O017

AC186747

(TAT)9

F: TTTCATGATTTGAGGAGCCC

380-410

58

2

0.462304

0.684211

0.049500*

0.348

    

R: CCCCACAAGTATGTTCCCAC

 

58

     

MABN26

MA4_106O017

AC186747

(CT)24

F: GTGGGAACATACTTGTGGGG

375-395

58

2

0.493612

0.047619

0.000000*

0.359

    

R: ACGGAAAACCACAAGCAATC

 

58

     

MABN27

MA4_106O017

AC186747

(GAA)4

F: GGATGCAAAGACGGACAAAT

470-520

58

3

0.667828

0.714286

0.000000*

0.575

    

R: TAATGGCTTTGCAACTGCTG

 

58

     

MABN28

MA4_106O017

AC186747

(GA)23

F: TGGAGGTCTCAACCAAAACC

390-410

60

2

0.480769

0.550000

0.639500

0.367

    

R: AGATTGGCTACTGTGGGTGG

 

60

     

MABN29

MA4_106O017

AC186747

(GAT)5

F: ACCAGCCACTGGAATCAAAC

350-385

60

3

0.600000

0.866667

0.069000

0.506

    

R: GTCTGCTGAAGAGCCAAACC

 

60

     

MABN30

MA4_106O017

AC186747

(ATTTT)3

F: CAGCCGTTGATGTTCAAATG

360-380

60

2

0.387097

1.000000

0.000500*

0.321

    

R: CGTTACGGTGGATCGTCTTT

 

60

     

MABN34

MA4_106O017

AC186747

(CT)18

F: TAGGTGAGAATGGGACGGAG

330-355

58

3

0.661451

0.368421

0.000000*

0.571

    

R: CAGTAGCAGCAACCTGGTGA

 

58

     

MABN35

MA4_106O017

AC186747

(CT)14

F: CTGTCACCAGGTTGCTGCTA

270-320

56

4

0.664103

0.450000

0.005500*

0.569

    

R: CTTCCTTGGACCTTTCATCG

 

56

     
  1. Tm, annealing temperature used; Na, number of alleles per locus observed; HE, expected heterozygosity under Hardy-Weinberg expectations; HO, observed heterozygosity; H-W, P value for deviation from Hardy-Weinberg equilibrium, with *significant departure (P < 0.05) from HW equilibrium; PIC, Polymorphism Information Content