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Table 1 Microsyntenic regions between Fragaria fosmids and P. trichocarpa, V. vinifera, M. truncatula or A. thaliana

From: Comparative genomic sequence analysis of strawberry and other rosids reveals significant microsynteny

F. vesca

P. trichocarpa

V. vinifera

M. truncatula

A. thaliana

01I13

VI (6); XVIII (6)

 

Chr3 (5)

Chr5 (4)

01L02

scaffold_66 (3)

   

05N03

VIII (3); X (3)

Chr1 (3)

  

08G19

II (3)

Chr18 (3)

  

12K04

  

Chr5 (3)

 

10B08

X (3)

 

Chr3 (3)

 

13I03

X (3)

Chr1 (3); Chr13 (4); Chr18 (3)

  

17O22

VII (3)

ChrUR (3)

 

Chr1 (3)

19H07

XII (3); XIV (3);

Chr15 (3); Chr16_R (3)

Chr7 (3)

 

19M24

XV (3)

 

Chr1 (3)

 

30I24

VI (4); XVIII (3)

  

Chr4 (3)

34E24

VII (4)

ChrUR (4); ChrUR (3)

Chr5 (3); Chr8 (4)

Chr5 (3)

38H02

VII (3); scaffold_158 (3)

   

40M11

II (3)

Chr18 (3)

  

41O22

IV (5); XI (6); scaffold_64 (3)

ChrUR (3)

  

48I08

X (4)

Chr13 (5)

  

51F10

scaffold_131 (4)

Chr14 (3)

Chr1 (4); Chr7 (4)

Chr5 (3)

52B01

scaffold_123 (3)

 

Chr2 (3)

 

52E09

XVII (3)

   

52I20

XII (4); XIV (3); XV (3)

Chr16_R (4)

 

Chr5 (3)

53J04

IV (4); XI (4)

ChrUR (3)

Chr2 (3)

 

53O08

V (3)

Chr18 (3)

  

72E18

VIII (7); X (5)

Chr13 (4); Chr6 (3)

Chr7 (4)

Chr3 (3); Chr3 (3)

73I22

IX (3)

Chr13 (3)

  

75H22

XII (4)

ChrUR (5)

Chr1 (3)

Chr5 (4)

76K13

II (4); V (3)

Chr18 (4)

  
  1. Numbers in parentheses are the number of gene pairs in the syntenic region.
  2. Bolded are the syntenic regions that are conserved in all five genomes.
  3. Italicized are the syntenic regions that are conserved in four of the five genomes