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Table 2 Results of experimental scoring of probes.

From: A general framework for optimization of probes for gene expression microarray and its application to the fungus Podospora anserina

Metrics Rejected probes Qualified probes CDS with probes Probe-deficient CDSa
SSR, SBR 2,013 (4.8%) 39,830 (95.2%) 10,327 (98.8%) 123 (1.2%)
CV 900 (2.1%) 40,943 (97.9%) 10,325 (95.2%) 125 (1.2%)
Mprobe and Marrayb 25,140 (60%) 16,480 (39.4%) 10,180 (97.4%) 140 (1.3%)
  1. a these CDS have had all of their probes rejected based only on one single metric. The combination of the three metrics resulted in more probe-deficient CDS (717) than the sum of probe-deficient CDS excluded because of a single criterion.
  2. b these metrics apply only to CDS with more than two probes. Therefore 223 probes, targeted to CDS with less than three probes, were excluded from this analysis.