From: An efficient annotation and gene-expression derivation tool for Illumina Solexa datasets
Chromosome | Chrom size (bp) | Lane1 | Lane2 | Lane3 | Lane4 | Lane5 | Lane6 | Lane7 | Lane8 |
---|---|---|---|---|---|---|---|---|---|
1 | 55,915,595 | 44087 | 56460 | 144310 | 125574 | CONTROL | 73721 | 77785 | 90255 |
2 | 51,656,713 | 58000 | 74229 | 190042 | 165634 | CONTROL | 96910 | 102557 | 117524 |
3 | 47,781,076 | 50677 | 64715 | 164496 | 142812 | CONTROL | 84010 | 88910 | 101738 |
4 | 49,243,852 | 50726 | 64908 | 165724 | 144360 | CONTROL | 84645 | 89600 | 102509 |
5 | 41,936,504 | 44080 | 56686 | 144930 | 125480 | CONTROL | 73587 | 78373 | 89551 |
6 | 50,722,821 | 61200 | 77619 | 199609 | 173280 | CONTROL | 100638 | 106572 | 122915 |
7 | 44,683,157 | 50451 | 64728 | 165386 | 144206 | CONTROL | 84790 | 89232 | 102316 |
8 | 46,995,532 | 75392 | 95643 | 245844 | 214476 | CONTROL | 125271 | 133156 | 152202 |
9 | 46,843,750 | 48079 | 61227 | 157808 | 138132 | CONTROL | 80633 | 84986 | 97566 |
10 | 50,969,635 | 61068 | 77456 | 198859 | 172297 | CONTROL | 101868 | 107309 | 122479 |
11 | 39,172,790 | 60306 | 77010 | 195521 | 170430 | CONTROL | 100450 | 105876 | 120835 |
12 | 40,113,140 | 43131 | 55977 | 141515 | 123466 | CONTROL | 72493 | 76784 | 88282 |
13 | 44,408,971 | 72442 | 92603 | 235446 | 204937 | CONTROL | 119710 | 126250 | 146480 |
14 | 49,711,204 | 49088 | 63027 | 161172 | 140375 | CONTROL | 82670 | 86971 | 99934 |
15 | 50,939,160 | 57040 | 73027 | 186523 | 162741 | CONTROL | 95461 | 100196 | 114936 |
16 | 37,397,385 | 41074 | 52851 | 134554 | 117510 | CONTROL | 68635 | 72143 | 82947 |
17 | 41,906,774 | 56466 | 72499 | 186013 | 161964 | CONTROL | 94513 | 99838 | 113529 |
18 | 62,308,140 | 59460 | 76866 | 195838 | 170495 | CONTROL | 100206 | 105912 | 121360 |
19 | 50,589,441 | 45240 | 57579 | 146309 | 127167 | CONTROL | 74770 | 79226 | 90339 |
20 | 46,773,167 | 46146 | 58890 | 150392 | 131338 | CONTROL | 76533 | 80716 | 92677 |
Reads aligned to genome | Â | 1,074,153 | 1,374,000 | 3,510,291 | 3,056,674 | - | 1,791,514 | 1,892,392 | 2,170,374 |
Reads with annotations | Â | 640,467 | 851,595 | 2,297,371 | 1,970,284 | - | 1,101,214 | 1,150,125 | 1,363,662 |
Reads without annotation | Â | 433,686 | 522,405 | 1,212,920 | 1,086,390 | - | 690,300 | 742,267 | 806,712 |