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Table 1 Number of reads per lane

From: An efficient annotation and gene-expression derivation tool for Illumina Solexa datasets

Chromosome

Chrom size (bp)

Lane1

Lane2

Lane3

Lane4

Lane5

Lane6

Lane7

Lane8

1

55,915,595

44087

56460

144310

125574

CONTROL

73721

77785

90255

2

51,656,713

58000

74229

190042

165634

CONTROL

96910

102557

117524

3

47,781,076

50677

64715

164496

142812

CONTROL

84010

88910

101738

4

49,243,852

50726

64908

165724

144360

CONTROL

84645

89600

102509

5

41,936,504

44080

56686

144930

125480

CONTROL

73587

78373

89551

6

50,722,821

61200

77619

199609

173280

CONTROL

100638

106572

122915

7

44,683,157

50451

64728

165386

144206

CONTROL

84790

89232

102316

8

46,995,532

75392

95643

245844

214476

CONTROL

125271

133156

152202

9

46,843,750

48079

61227

157808

138132

CONTROL

80633

84986

97566

10

50,969,635

61068

77456

198859

172297

CONTROL

101868

107309

122479

11

39,172,790

60306

77010

195521

170430

CONTROL

100450

105876

120835

12

40,113,140

43131

55977

141515

123466

CONTROL

72493

76784

88282

13

44,408,971

72442

92603

235446

204937

CONTROL

119710

126250

146480

14

49,711,204

49088

63027

161172

140375

CONTROL

82670

86971

99934

15

50,939,160

57040

73027

186523

162741

CONTROL

95461

100196

114936

16

37,397,385

41074

52851

134554

117510

CONTROL

68635

72143

82947

17

41,906,774

56466

72499

186013

161964

CONTROL

94513

99838

113529

18

62,308,140

59460

76866

195838

170495

CONTROL

100206

105912

121360

19

50,589,441

45240

57579

146309

127167

CONTROL

74770

79226

90339

20

46,773,167

46146

58890

150392

131338

CONTROL

76533

80716

92677

Reads aligned to genome

 

1,074,153

1,374,000

3,510,291

3,056,674

-

1,791,514

1,892,392

2,170,374

Reads with annotations

 

640,467

851,595

2,297,371

1,970,284

-

1,101,214

1,150,125

1,363,662

Reads without annotation

 

433,686

522,405

1,212,920

1,086,390

-

690,300

742,267

806,712

  1. Lanes 1 and 2 had one pM of cDNA, lanes 3 and 4 had 4 pM of cDNA while lanes 6, 7 and 8 had 2 pM of cDNA. The number of reads is roughly proportional to the cDNA concentration. The number of reads per lane which aligned to the Soybean genome is provided. The number of reads which had functional annotation is also provided. Figure 1 ratifies the textual data pertaining to lane 2 in this table.