Figure 2
From: ANDES: Statistical tools for the ANalyses of DEep Sequencing
Example position profile for the MSA shown in Figure 1. Column 1 contains the most common allele. When multiple alleles share the value of the greatest frequency, one of the alleles is arbitrarily chosen to represent that position. Columns 2-5 represent the frequency of each nucleotide at each position for the sample represented by the position profile.