ANDES: Statistical tools for the ANalyses of DEep Sequencing

BMC Research Notes

Table 1 Example distance matrix table.

	1-Jun-08	16-Jun-08	16-Nov-08	1-Dec-08	16-Dec-08
1-Jun-08	0.00000	0.01297	0.03203	0.03184	0.02221
16-Jun-08	0.01297	0.00000	0.02209	0.02191	0.01220
16-Nov-08	0.03203	0.02209	0.00000	0.00247	0.01054
1-Dec-08	0.03184	0.02191	0.00247	0.00000	0.01043
16-Dec-08	0.02221	0.01220	0.01054	0.01043	0.00000

This table represents a subset of the RMSD-based distances that were calculated between partitions of human influenza H1N1 collection dates. Each value is the average positional RMSD along the lengths of the 2 compared HA segments. The complete RMSD distance matrix was then used as input into R to compute a dendrogram as seen in Figure 7.

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