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Table 3 Example nucleotide conversion analysis table

From: ANDES: Statistical tools for the ANalyses of DEep Sequencing

  

10th Passage

  

A

T

G

C

-

1st Passage

A

98.99%

0.24%

0.18%

0.12%

0.47%

 

T

0.20%

98.78%

0.35%

0.28%

0.40%

 

G

0.47%

0.08%

99.18%

0.06%

0.22%

 

C

0.10%

0.67%

0.05%

98.97%

0.21%

 

-

13.74%

33.03%

22.68%

30.35%

0.19%

  1. The source nucleotide is represented along the rows. The destination nucleotide is represented along the columns. To interpret the measure at 1st passage G/10th passage A, one could say there is a 0.47% probability that a G in the first passage will become an A at the 10th passage, P(A in 10th passage ∣ G in 1st passage) = 0.47%. Transition frequencies have been highlighted in bold. Because the table contains conditional probabilities, i.e. not marginal probabilities, the percentages in each row will sum to 100%, but the percentages down each column may not.