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Table 3 Detection of copy number of specific regions

From: Evaluation of high-resolution microarray platforms for genomic profiling of bone tumours

Platform 0n: CDKN2A
TC-32
1n: 9p21.3-p21.2
TC-32
3n: Chr 8
TC-32
4n: 1q
TC-32
>10n: MDM2
OSA
  Platform Nexus Platform Nexus Platform Nexus Platform Nexus Platform Nexus
Affymetrix Genome-Wide Human SNP array 6.0 Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes
Agilent Human Genome CGH 244A Yes Yes Yes 0n Yes Yes Yes Yes Yes Yes
Illumina HumanExon510s-duo Yes Yes Yes Yes Yes Yes 3n/4n 3n Yes Yes
Nimblegen HG18 CGH 385 k WG Tiling v1.0 1 - 1n - Yes - Yes - 3n - Yes
  1. 1Nimblegen's analysis software segments the data without scoring of copy number
  2. Detection of copy number of five specific chromosomes or chromosomal regions representing 0, 1, 3 and 4 copies in TC-32, as well as high-level amplification in OSA, using the platform-specific software and the platform-independent software Nexus.