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Table 4 Detection of copy number aberrations

From: Evaluation of high-resolution microarray platforms for genomic profiling of bone tumours

Platform TC-32 OSA
  Homozygous copy loss Loss Gain High copy gain Homozygous copy loss Loss Gain High copy gain
Affymetrix Genome-Wide Human SNP array 6.0 19 45 40 21 18 100 101 72
  23 76 76 28 16 114 123 82
Agilent Human Genome CGH 244A 4 11 10 2 9 82 58 42
  4 8 10 2 13 103 65 37
Illumina HumanExon510s-duo 3 32 21 3 2 75 77 33
  3 33 19 2 4 86 78 36
Nimblegen HG18 CGH 385 k WG Tiling v1.0 0 7 15 2 1 31 62 36
  0 11 6 0 1 25 55 36
  1. Number of copy number aberrations detected in chromosome 1-22 in TC-32 and OSA using the platform-independent software Nexus.