TY - JOUR AU - Berman, H. M. AU - Westbrook, J. AU - Feng, Z. AU - Gilliland, G. AU - Bhat, T. N. AU - Weissig, H. AU - Shindyalov, I. N. AU - Bourne, P. E. PY - 2000 DA - 2000// TI - The Protein Data Bank JO - Nucleic Acids Res VL - 28 UR - https://doi.org/10.1093/nar/28.1.235 DO - 10.1093/nar/28.1.235 ID - Berman2000 ER - TY - JOUR AU - Cavasotto, C. N. AU - Phatak, S. S. PY - 2009 DA - 2009// TI - Homology modeling in drug discovery: current trends and applications JO - Drug Discov Today VL - 14 UR - https://doi.org/10.1016/j.drudis.2009.04.006 DO - 10.1016/j.drudis.2009.04.006 ID - Cavasotto2009 ER - TY - JOUR AU - Manjasetty, B. A. AU - Turnbull, A. P. AU - Panjikar, S. AU - Bussow, K. AU - Chance, M. R. PY - 2008 DA - 2008// TI - Automated technologies and novel techniques to accelerate protein crystallography for structural genomics JO - Proteomics VL - 8 UR - https://doi.org/10.1002/pmic.200700687 DO - 10.1002/pmic.200700687 ID - Manjasetty2008 ER - TY - JOUR AU - Krieger, E. AU - Nabuurs, S. B. AU - Vriend, G. PY - 2003 DA - 2003// TI - Homology modeling JO - Methods Biochem Anal VL - 44 ID - Krieger2003 ER - TY - JOUR AU - Arnold, K. AU - Kiefer, F. AU - Kopp, J. AU - Battey, J. N. AU - Podvinec, M. AU - Westbrook, J. D. AU - Berman, H. M. AU - Bordoli, L. AU - Schwede, T. PY - 2009 DA - 2009// TI - The Protein Model Portal JO - J Struct Funct Genomics VL - 10 UR - https://doi.org/10.1007/s10969-008-9048-5 DO - 10.1007/s10969-008-9048-5 ID - Arnold2009 ER - TY - STD TI - Pieper U, Eswar N, Davis FP, Braberg H, Madhusudhan MS, Rossi A, Marti-Renom M, Karchin R, Webb BM, Eramian D: MODBASE: a database of annotated comparative protein structure models and associated resources. Nucleic Acids Res. 2006, D291-295. 10.1093/nar/gkj059. 34 Database ID - ref6 ER - TY - JOUR AU - Dalton, J. A. AU - Jackson, R. M. PY - 2007 DA - 2007// TI - An evaluation of automated homology modelling methods at low target template sequence similarity JO - Bioinformatics VL - 23 UR - https://doi.org/10.1093/bioinformatics/btm262 DO - 10.1093/bioinformatics/btm262 ID - Dalton2007 ER - TY - JOUR AU - Venclovas, C. AU - Margelevicius, M. PY - 2009 DA - 2009// TI - The use of automatic tools and human expertise in template-based modeling of CASP8 target proteins JO - Proteins VL - 77 UR - https://doi.org/10.1002/prot.22515 DO - 10.1002/prot.22515 ID - Venclovas2009 ER - TY - JOUR AU - Sali, A. AU - Blundell, T. L. PY - 1993 DA - 1993// TI - Comparative protein modelling by satisfaction of spatial restraints JO - J Mol Biol VL - 234 UR - https://doi.org/10.1006/jmbi.1993.1626 DO - 10.1006/jmbi.1993.1626 ID - Sali1993 ER - TY - JOUR AU - Fiser, A. AU - Do, R. K. AU - Sali, A. PY - 2000 DA - 2000// TI - Modeling of loops in protein structures JO - Protein Sci VL - 9 UR - https://doi.org/10.1110/ps.9.9.1753 DO - 10.1110/ps.9.9.1753 ID - Fiser2000 ER - TY - JOUR AU - Hildebrand, A. AU - Remmert, M. AU - Biegert, A. AU - Soding, J. PY - 2009 DA - 2009// TI - Fast and accurate automatic structure prediction with HHpred JO - Proteins VL - 77 UR - https://doi.org/10.1002/prot.22499 DO - 10.1002/prot.22499 ID - Hildebrand2009 ER - TY - STD TI - Soding J, Biegert A, Lupas AN: The HHpred interactive server for protein homology detection and structure prediction. Nucleic Acids Res. 2005, W244-248. 10.1093/nar/gki408. 33 Web Server ID - ref12 ER - TY - JOUR AU - Battey, J. N. AU - Kopp, J. AU - Bordoli, L. AU - Read, R. J. AU - Clarke, N. D. AU - Schwede, T. PY - 2007 DA - 2007// TI - Automated server predictions in CASP7 JO - Proteins VL - 69 UR - https://doi.org/10.1002/prot.21761 DO - 10.1002/prot.21761 ID - Battey2007 ER - TY - JOUR AU - Dunbrack, R. L. PY - 2006 DA - 2006// TI - Sequence comparison and protein structure prediction JO - Curr Opin Struct Biol VL - 16 UR - https://doi.org/10.1016/j.sbi.2006.05.006 DO - 10.1016/j.sbi.2006.05.006 ID - Dunbrack2006 ER - TY - JOUR AU - Fiser, A. AU - Sali, A. PY - 2003 DA - 2003// TI - Modeller: generation and refinement of homology-based protein structure models JO - Methods Enzymol VL - 374 UR - https://doi.org/10.1016/S0076-6879(03)74020-8 DO - 10.1016/S0076-6879(03)74020-8 ID - Fiser2003 ER - TY - JOUR AU - Hall, T. A. PY - 1999 DA - 1999// TI - Bioedit: a user-friendly biological sequence alignment editor and analysis program for windows 95/98/nt JO - Nucleic Acids Symposium Series VL - 41 ID - Hall1999 ER - TY - JOUR AU - Sayle, R. A. AU - Milner-White, E. J. PY - 1995 DA - 1995// TI - RASMOL: biomolecular graphics for all JO - Trends Biochem Sci VL - 20 UR - https://doi.org/10.1016/S0968-0004(00)89080-5 DO - 10.1016/S0968-0004(00)89080-5 ID - Sayle1995 ER - TY - JOUR AU - Pettersen, E. F. AU - Goddard, T. D. AU - Huang, C. C. AU - Couch, G. S. AU - Greenblatt, D. M. AU - Meng, E. C. AU - Ferrin, T. E. PY - 2004 DA - 2004// TI - UCSF Chimera--a visualization system for exploratory research and analysis JO - J Comput Chem VL - 25 UR - https://doi.org/10.1002/jcc.20084 DO - 10.1002/jcc.20084 ID - Pettersen2004 ER - TY - JOUR AU - Humphrey, W. AU - Dalke, A. AU - Schulten, K. PY - 1996 DA - 1996// TI - VMD: visual molecular dynamics JO - J Mol Graph VL - 14 UR - https://doi.org/10.1016/0263-7855(96)00018-5 DO - 10.1016/0263-7855(96)00018-5 ID - Humphrey1996 ER - TY - JOUR AU - Shen, M. Y. AU - Sali, A. PY - 2006 DA - 2006// TI - Statistical potential for assessment and prediction of protein structures JO - Protein Sci VL - 15 UR - https://doi.org/10.1110/ps.062416606 DO - 10.1110/ps.062416606 ID - Shen2006 ER -