TY - JOUR AU - Strauss, J. H. AU - Strauss, E. G. PY - 1994 DA - 1994// TI - The alphaviruses: gene expression, replication, and evolution JO - Microbiol Rev VL - 58 ID - Strauss1994 ER - TY - JOUR AU - Weston, J. H. AU - Welsh, M. D. AU - McLoughlin, M. F. AU - Todd, D. PY - 1999 DA - 1999// TI - Salmon pancreas disease virus, an alphavirus infecting farmed Atlantic salmon, Salmo salar L JO - Virology VL - 256 UR - https://doi.org/10.1006/viro.1999.9654 DO - 10.1006/viro.1999.9654 ID - Weston1999 ER - TY - JOUR AU - Villoing, S. AU - Bearzotti, M. AU - Chilmonczyk, S. AU - Castric, J. AU - Bremont, M. PY - 2000 DA - 2000// TI - Rainbow trout sleeping disease virus is an atypical alphavirus JO - J Virol VL - 74 UR - https://doi.org/10.1128/JVI.74.1.173-183.2000 DO - 10.1128/JVI.74.1.173-183.2000 ID - Villoing2000 ER - TY - JOUR AU - McLoughlin, M. F. AU - Graham, D. A. PY - 2007 DA - 2007// TI - Alphavirus infections in salmonids--a review JO - J Fish Dis VL - 30 UR - https://doi.org/10.1111/j.1365-2761.2007.00848.x DO - 10.1111/j.1365-2761.2007.00848.x ID - McLoughlin2007 ER - TY - JOUR AU - Weston, J. AU - Villoing, S. AU - Bremont, M. AU - Castric, J. AU - Pfeffer, M. AU - Jewhurst, V. AU - McLoughlin, M. AU - Rodseth, O. AU - Christie, K. E. AU - Koumans, J. PY - 2002 DA - 2002// TI - Comparison of two aquatic alphaviruses, salmon pancreas disease virus and sleeping disease virus, by using genome sequence analysis, monoclonal reactivity, and cross-infection JO - J Virol VL - 76 UR - https://doi.org/10.1128/JVI.76.12.6155-6163.2002 DO - 10.1128/JVI.76.12.6155-6163.2002 ID - Weston2002 ER - TY - JOUR AU - Firth, A. E. AU - Chung, B. Y. AU - Fleeton, M. N. AU - Atkins, J. F. PY - 2008 DA - 2008// TI - Discovery of frameshifting in Alphavirus 6K resolves a 20-year enigma JO - Virol J VL - 5 UR - https://doi.org/10.1186/1743-422X-5-108 DO - 10.1186/1743-422X-5-108 ID - Firth2008 ER - TY - JOUR AU - Moriette, C. AU - LeBerre, M. AU - Boscher, S. K. AU - Castric, J. AU - Bremont, M. PY - 2005 DA - 2005// TI - Characterization and mapping of monoclonal antibodies against the Sleeping disease virus, an aquatic alphavirus JO - J Gen Virol VL - 86 UR - https://doi.org/10.1099/vir.0.81030-0 DO - 10.1099/vir.0.81030-0 ID - Moriette2005 ER - TY - JOUR AU - Karlsen, M. AU - Yousaf, M. N. AU - Villoing, S. AU - Nylund, A. AU - Rimstad, E. PY - 2010 DA - 2010// TI - The amino terminus of the salmonid alphavirus capsid protein determines subcellular localization and inhibits cellular proliferation JO - Arch Virol VL - 155 UR - https://doi.org/10.1007/s00705-010-0717-x DO - 10.1007/s00705-010-0717-x ID - Karlsen2010 ER - TY - JOUR AU - Karlsen, M. AU - Villoing, S. AU - Rimstad, E. AU - Nylund, A. PY - 2009 DA - 2009// TI - Characterization of untranslated regions of the salmonid alphavirus 3 (SAV3) genome and construction of a SAV3 based replicon JO - Virol J VL - 6 UR - https://doi.org/10.1186/1743-422X-6-173 DO - 10.1186/1743-422X-6-173 ID - Karlsen2009 ER - TY - JOUR AU - Moriette, C. AU - Leberre, M. AU - Lamoureux, A. AU - Lai, T. L. AU - Bremont, M. PY - 2006 DA - 2006// TI - Recovery of a recombinant salmonid alphavirus fully attenuated and protective for rainbow trout JO - J Virol VL - 80 UR - https://doi.org/10.1128/JVI.80.8.4088-4098.2006 DO - 10.1128/JVI.80.8.4088-4098.2006 ID - Moriette2006 ER - TY - JOUR AU - Garmashova, N. AU - Gorchakov, R. AU - Volkova, E. AU - Paessler, S. AU - Frolova, E. AU - Frolov, I. PY - 2007 DA - 2007// TI - The Old World and New World alphaviruses use different virus-specific proteins for induction of transcriptional shutoff JO - J Virol VL - 81 UR - https://doi.org/10.1128/JVI.02073-06 DO - 10.1128/JVI.02073-06 ID - Garmashova2007 ER - TY - JOUR AU - Elgizoli, M. AU - Dai, Y. AU - Kempf, C. AU - Koblet, H. AU - Michel, M. R. PY - 1989 DA - 1989// TI - Semliki Forest virus capsid protein acts as a pleiotropic regulator of host cellular protein synthesis JO - J Virol VL - 63 ID - Elgizoli1989 ER - TY - JOUR AU - Favre, D. AU - Studer, E. AU - Michel, M. R. PY - 1994 DA - 1994// TI - Two nucleolar targeting signals present in the N-terminal part of Semliki Forest virus capsid protein JO - Arch Virol VL - 137 UR - https://doi.org/10.1007/BF01311181 DO - 10.1007/BF01311181 ID - Favre1994 ER - TY - JOUR AU - Michel, M. R. AU - Elgizoli, M. AU - Dai, Y. AU - Jakob, R. AU - Koblet, H. AU - Arrigo, A. P. PY - 1990 DA - 1990// TI - Karyophilic properties of Semliki Forest virus nucleocapsid protein JO - J Virol VL - 64 ID - Michel1990 ER - TY - JOUR AU - Mitchell, C. AU - de Andrade-Rozental, A. F. AU - Souto-Padron, T. AU - Carvalho, M. G. PY - 1997 DA - 1997// TI - Identification of mayaro virus nucleocapsid protein in nucleus of Aedes albopictus cells JO - Virus Res VL - 47 UR - https://doi.org/10.1016/S0168-1702(96)01408-6 DO - 10.1016/S0168-1702(96)01408-6 ID - Mitchell1997 ER - TY - JOUR AU - Garoff, H. AU - Sjoberg, M. AU - Cheng, R. H. PY - 2004 DA - 2004// TI - Budding of alphaviruses JO - Virus Res VL - 106 UR - https://doi.org/10.1016/j.virusres.2004.08.008 DO - 10.1016/j.virusres.2004.08.008 ID - Garoff2004 ER - TY - JOUR AU - Fringuelli, E. AU - Rowley, H. M. AU - Wilson, J. C. AU - Hunter, R. AU - Rodger, H. AU - Graham, D. A. PY - 2008 DA - 2008// TI - Phylogenetic analyses and molecular epidemiology of European salmonid alphaviruses (SAV) based on partial E2 and nsP3 gene nucleotide sequences JO - J Fish Dis VL - 31 UR - https://doi.org/10.1111/j.1365-2761.2008.00944.x DO - 10.1111/j.1365-2761.2008.00944.x ID - Fringuelli2008 ER - TY - JOUR AU - Hodneland, K. AU - Bratland, A. AU - Christie, K. E. AU - Endresen, C. AU - Nylund, A. PY - 2005 DA - 2005// TI - New subtype of salmonid alphavirus (SAV), Togaviridae, from Atlantic salmon Salmo salar and rainbow trout Oncorhynchus mykiss in Norway JO - Dis Aquat Organ VL - 66 UR - https://doi.org/10.3354/dao066113 DO - 10.3354/dao066113 ID - Hodneland2005 ER - TY - JOUR AU - Graham, D. A. AU - Rowley, H. M. AU - Walker, I. W. AU - Weston, J. H. AU - Branson, E. J. AU - Todd, D. PY - 2003 DA - 2003// TI - First isolation of sleeping disease virus from rainbow trout, Oncorhynchus mykiss (Walbaum), in the United Kingdom JO - J Fish Dis VL - 26 UR - https://doi.org/10.1046/j.1365-2761.2003.00505.x DO - 10.1046/j.1365-2761.2003.00505.x ID - Graham2003 ER - TY - JOUR AU - Andersen, L. AU - Bratland, A. AU - Hodneland, K. AU - Nylund, A. PY - 2007 DA - 2007// TI - Tissue tropism of salmonid alphaviruses (subtypes SAV1 and SAV3) in experimentally challenged Atlantic salmon (Salmo salar L.) JO - Arch Virol VL - 152 UR - https://doi.org/10.1007/s00705-007-1006-1 DO - 10.1007/s00705-007-1006-1 ID - Andersen2007 ER - TY - JOUR AU - Christie, K. E. AU - Graham, D. A. AU - McLoughlin, M. F. AU - Villoing, S. AU - Todd, D. AU - Knappskog, D. PY - 2007 DA - 2007// TI - Experimental infection of Atlantic salmon Salmo salar pre-smolts by i.p. injection with new Irish and Norwegian salmonid alphavirus (SAV) isolates: a comparative study JO - Dis Aquat Organ VL - 75 UR - https://doi.org/10.3354/dao075013 DO - 10.3354/dao075013 ID - Christie2007 ER - TY - JOUR AU - Boscher, S. K. AU - McLoughlin, M. AU - Le Ven, A. AU - Cabon, J. AU - Baud, M. AU - Castric, J. PY - 2006 DA - 2006// TI - Experimental transmission of sleeping disease in one-year-old rainbow trout, Oncorhynchus mykiss (Walbaum), induced by sleeping disease virus JO - J Fish Dis VL - 29 UR - https://doi.org/10.1111/j.1365-2761.2006.00716.x DO - 10.1111/j.1365-2761.2006.00716.x ID - Boscher2006 ER - TY - JOUR AU - Taksdal, T. AU - Olsen, A. B. AU - Bjerkas, I. AU - Hjortaas, M. J. AU - Dannevig, B. H. AU - Graham, D. A. AU - McLoughlin, M. F. PY - 2007 DA - 2007// TI - Pancreas disease in farmed Atlantic salmon, Salmo salar L., and rainbow trout, Oncorhynchus mykiss (Walbaum), in Norway JO - J Fish Dis VL - 30 UR - https://doi.org/10.1111/j.1365-2761.2007.00845.x DO - 10.1111/j.1365-2761.2007.00845.x ID - Taksdal2007 ER - TY - JOUR AU - Crockford, T. AU - Menzies, F. D. AU - McLoughlin, M. F. AU - Wheatley, S. B. AU - Goodall, E. A. PY - 1999 DA - 1999// TI - Aspects of the epizootiology of pancreas disease in farmed Atlantic salmon Salmo salar in Ireland JO - Dis Aquat Organ VL - 36 UR - https://doi.org/10.3354/dao036113 DO - 10.3354/dao036113 ID - Crockford1999 ER - TY - JOUR AU - Karlsen, M. AU - Hodneland, K. AU - Endresen, C. AU - Nylund, A. PY - 2006 DA - 2006// TI - Genetic stability within the Norwegian subtype of salmonid alphavirus (family Togaviridae) JO - Arch Virol VL - 151 UR - https://doi.org/10.1007/s00705-005-0687-6 DO - 10.1007/s00705-005-0687-6 ID - Karlsen2006 ER - TY - JOUR AU - Bratland, A. AU - Nylund, A. PY - 2009 DA - 2009// TI - Studies on the possibility of vertical transmission of Norwegian salmonid Alphavirus in production of Atlantic salmon in Norway JO - J Aquat Anim Health VL - 21 UR - https://doi.org/10.1577/H08-038.1 DO - 10.1577/H08-038.1 ID - Bratland2009 ER - TY - JOUR AU - Kristoffersen, A. B. AU - Viljugrein, H. AU - Kongtorp, R. T. AU - Brun, E. AU - Jansen, P. A. PY - 2009 DA - 2009// TI - Risk factors for pancreas disease (PD) outbreaks in farmed Atlantic salmon and rainbow trout in Norway during 2003-2007 JO - Prev Vet Med VL - 90 UR - https://doi.org/10.1016/j.prevetmed.2009.04.003 DO - 10.1016/j.prevetmed.2009.04.003 ID - Kristoffersen2009 ER - TY - JOUR AU - Viljugrein, H. AU - Staalstrom, A. AU - Molvaelr, J. AU - Urke, H. A. AU - Jansen, P. A. PY - 2009 DA - 2009// TI - Integration of hydrodynamics into a statistical model on the spread of pancreas disease (PD) in salmon farming JO - Dis Aquat Organ VL - 88 UR - https://doi.org/10.3354/dao02151 DO - 10.3354/dao02151 ID - Viljugrein2009 ER - TY - JOUR AU - Graham, D. A. AU - Jewhurst, H. AU - McLoughlin, M. F. AU - Sourd, P. AU - Rowley, H. M. AU - Taylor, C. AU - Todd, D. PY - 2006 DA - 2006// TI - Sub-clinical infection of farmed Atlantic salmon Salmo salar with salmonid alphavirus--a prospective longitudinal study JO - Dis Aquat Organ VL - 72 UR - https://doi.org/10.3354/dao072193 DO - 10.3354/dao072193 ID - Graham2006 ER - TY - STD TI - Graham DA, Fringuelli E, Wilson C, Rowley HM, Brown A, Rodger H, McLoughlin MF, McManus C, Casey E, McCarthy LJ: Prospective longitudinal studies of salmonid alphavirus infections on two Atlantic salmon farms in Ireland; evidence for viral persistence. J Fish Dis. 33 (2): 123-135. 10.1111/j.1365-2761.2009.01096.x. ID - ref30 ER - TY - JOUR AU - Anishchenko, M. AU - Bowen, R. A. AU - Paessler, S. AU - Austgen, L. AU - Greene, I. P. AU - Weaver, S. C. PY - 2006 DA - 2006// TI - Venezuelan encephalitis emergence mediated by a phylogenetically predicted viral mutation JO - Proc Natl Acad Sci USA VL - 103 UR - https://doi.org/10.1073/pnas.0509961103 DO - 10.1073/pnas.0509961103 ID - Anishchenko2006 ER - TY - JOUR AU - Tsetsarkin, K. A. AU - Vanlandingham, D. L. AU - McGee, C. E. AU - Higgs, S. PY - 2007 DA - 2007// TI - A single mutation in chikungunya virus affects vector specificity and epidemic potential JO - PLoS Pathog VL - 3 UR - https://doi.org/10.1371/journal.ppat.0030201 DO - 10.1371/journal.ppat.0030201 ID - Tsetsarkin2007 ER - TY - JOUR AU - Tsetsarkin, K. AU - Higgs, S. AU - McGee, C. E. AU - De Lamballerie, X. AU - Charrel, R. N. AU - Vanlandingham, D. L. PY - 2006 DA - 2006// TI - Infectious clones of Chikungunya virus (La Reunion isolate) for vector competence studies JO - Vector Borne Zoonotic Dis VL - 6 UR - https://doi.org/10.1089/vbz.2006.6.325 DO - 10.1089/vbz.2006.6.325 ID - Tsetsarkin2006 ER - TY - JOUR AU - Tsetsarkin, K. A. AU - McGee, C. E. AU - Volk, S. M. AU - Vanlandingham, D. L. AU - Weaver, S. C. AU - Higgs, S. PY - 2009 DA - 2009// TI - Epistatic roles of E2 glycoprotein mutations in adaption of chikungunya virus to Aedes albopictus and Ae. aegypti mosquitoes JO - PLoS One VL - 4 UR - https://doi.org/10.1371/journal.pone.0006835 DO - 10.1371/journal.pone.0006835 ID - Tsetsarkin2009 ER - TY - JOUR AU - Xu, C. AU - Guo, T. C. AU - Mutoloki, S. AU - Haugland, Ø. AU - Marjara, I. S. AU - Evensen, Ø. PY - 2010 DA - 2010// TI - Alpha interferon and not gamma interferon inhibits salmonid alphavirus subtype 3 replication in vitro JO - J Virol VL - 84 UR - https://doi.org/10.1128/JVI.00851-10 DO - 10.1128/JVI.00851-10 ID - Xu2010 ER - TY - STD TI - Rost B, Yachdav G, Liu J: The PredictProtein server. Nucleic Acids Res. 2004, W321-326. 10.1093/nar/gkh377. 32 Web Server ID - ref36 ER - TY - JOUR AU - Graham, D. A. AU - Wilson, C. AU - Jewhurst, H. AU - Rowley, H. PY - 2008 DA - 2008// TI - Cultural characteristics of salmonid alphaviruses--influence of cell line and temperature JO - J Fish Dis VL - 31 UR - https://doi.org/10.1111/j.1365-2761.2008.00946.x DO - 10.1111/j.1365-2761.2008.00946.x ID - Graham2008 ER - TY - JOUR AU - Lee, C. AU - Calvert, J. G. AU - Welch, S. K. AU - Yoo, D. PY - 2005 DA - 2005// TI - A DNA-launched reverse genetics system for porcine reproductive and respiratory syndrome virus reveals that homodimerization of the nucleocapsid protein is essential for virus infectivity JO - Virology VL - 331 UR - https://doi.org/10.1016/j.virol.2004.10.026 DO - 10.1016/j.virol.2004.10.026 ID - Lee2005 ER - TY - JOUR AU - Dubensky, T. W. AU - Driver, D. A. AU - Polo, J. M. AU - Belli, B. A. AU - Latham, E. M. AU - Ibanez, C. E. AU - Chada, S. AU - Brumm, D. AU - Banks, T. A. AU - Mento, S. J. PY - 1996 DA - 1996// TI - Sindbis virus DNA-based expression vectors: utility for in vitro and in vivo gene transfer JO - J Virol VL - 70 ID - Dubensky1996 ER - TY - JOUR AU - Hardy, R. W. PY - 2006 DA - 2006// TI - The role of the 3' terminus of the Sindbis virus genome in minus-strand initiation site selection JO - Virology VL - 345 UR - https://doi.org/10.1016/j.virol.2005.10.018 DO - 10.1016/j.virol.2005.10.018 ID - Hardy2006 ER - TY - JOUR AU - Tomar, S. AU - Hardy, R. W. AU - Smith, J. L. AU - Kuhn, R. J. PY - 2006 DA - 2006// TI - Catalytic core of alphavirus nonstructural protein nsP4 possesses terminal adenylyltransferase activity JO - J Virol VL - 80 UR - https://doi.org/10.1128/JVI.01067-06 DO - 10.1128/JVI.01067-06 ID - Tomar2006 ER - TY - JOUR AU - Raju, R. AU - Hajjou, M. AU - Hill, K. R. AU - Botta, V. AU - Botta, S. PY - 1999 DA - 1999// TI - In vivo addition of poly(A) tail and AU-rich sequences to the 3' terminus of the Sindbis virus RNA genome: a novel 3'-end repair pathway JO - J Virol VL - 73 ID - Raju1999 ER - TY - JOUR AU - Hardy, R. W. AU - Rice, C. M. PY - 2005 DA - 2005// TI - Requirements at the 3' end of the sindbis virus genome for efficient synthesis of minus-strand RNA JO - J Virol VL - 79 UR - https://doi.org/10.1128/JVI.79.8.4630-4639.2005 DO - 10.1128/JVI.79.8.4630-4639.2005 ID - Hardy2005 ER - TY - JOUR AU - Vasiljeva, L. AU - Merits, A. AU - Auvinen, P. AU - Kaariainen, L. PY - 2000 DA - 2000// TI - Identification of a novel function of the alphavirus capping apparatus. RNA 5'-triphosphatase activity of Nsp2 JO - J Biol Chem VL - 275 UR - https://doi.org/10.1074/jbc.M910340199 DO - 10.1074/jbc.M910340199 ID - Vasiljeva2000 ER - TY - JOUR AU - Gorbalenya, A. E. AU - Koonin, E. V. AU - Lai, M. M. PY - 1991 DA - 1991// TI - Putative papain-related thiol proteases of positive-strand RNA viruses. Identification of rubi- and aphthovirus proteases and delineation of a novel conserved domain associated with proteases of rubi-, alpha- and coronaviruses JO - FEBS Lett VL - 288 UR - https://doi.org/10.1016/0014-5793(91)81034-6 DO - 10.1016/0014-5793(91)81034-6 ID - Gorbalenya1991 ER - TY - JOUR AU - Malet, H. AU - Coutard, B. AU - Jamal, S. AU - Dutartre, H. AU - Papageorgiou, N. AU - Neuvonen, M. AU - Ahola, T. AU - Forrester, N. AU - Gould, E. A. AU - Lafitte, D. PY - 2009 DA - 2009// TI - The crystal structures of Chikungunya and Venezuelan equine encephalitis virus nsP3 macro domains define a conserved adenosine binding pocket JO - J Virol VL - 83 UR - https://doi.org/10.1128/JVI.00189-09 DO - 10.1128/JVI.00189-09 ID - Malet2009 ER - TY - JOUR AU - Schlesinger, S. PY - 2000 DA - 2000// TI - Alphavirus expression vectors JO - Adv Virus Res VL - 55 UR - https://doi.org/10.1016/S0065-3527(00)55018-0 DO - 10.1016/S0065-3527(00)55018-0 ID - Schlesinger2000 ER - TY - JOUR AU - Morrison, T. E. AU - Whitmore, A. C. AU - Shabman, R. S. AU - Lidbury, B. A. AU - Mahalingam, S. AU - Heise, M. T. PY - 2006 DA - 2006// TI - Characterization of Ross River virus tropism and virus-induced inflammation in a mouse model of viral arthritis and myositis JO - J Virol VL - 80 UR - https://doi.org/10.1128/JVI.80.2.737-749.2006 DO - 10.1128/JVI.80.2.737-749.2006 ID - Morrison2006 ER - TY - JOUR AU - Vanlandingham, D. L. AU - Tsetsarkin, K. AU - Hong, C. AU - Klingler, K. AU - McElroy, K. L. AU - Lehane, M. J. AU - Higgs, S. PY - 2005 DA - 2005// TI - Development and characterization of a double subgenomic chikungunya virus infectious clone to express heterologous genes in Aedes aegypti mosquitoes JO - Insect Biochem Mol Biol VL - 35 UR - https://doi.org/10.1016/j.ibmb.2005.05.008 DO - 10.1016/j.ibmb.2005.05.008 ID - Vanlandingham2005 ER - TY - JOUR AU - Rausalu, K. AU - Iofik, A. AU - Ulper, L. AU - Karo-Astover, L. AU - Lulla, V. AU - Merits, A. PY - 2009 DA - 2009// TI - Properties and use of novel replication-competent vectors based on Semliki Forest virus JO - Virol J VL - 6 UR - https://doi.org/10.1186/1743-422X-6-33 DO - 10.1186/1743-422X-6-33 ID - Rausalu2009 ER - TY - JOUR AU - Thomas, J. M. AU - Klimstra, W. B. AU - Ryman, K. D. AU - Heidner, H. W. PY - 2003 DA - 2003// TI - Sindbis virus vectors designed to express a foreign protein as a cleavable component of the viral structural polyprotein JO - J Virol VL - 77 UR - https://doi.org/10.1128/JVI.77.10.5598-5606.2003 DO - 10.1128/JVI.77.10.5598-5606.2003 ID - Thomas2003 ER - TY - CHAP PY - 1997 DA - 1997// TI - Manual for the virological investigation of polio BT - Geneva ID - ref52 ER - TY - JOUR AU - Drummond, A. J. AU - Rambaut, A. PY - 2007 DA - 2007// TI - BEAST: Bayesian evolutionary analysis by sampling trees JO - BMC Evol Biol VL - 7 UR - https://doi.org/10.1186/1471-2148-7-214 DO - 10.1186/1471-2148-7-214 ID - Drummond2007 ER - TY - JOUR AU - Zhang, W. AU - Heil, M. AU - Kuhn, R. J. AU - Baker, T. S. PY - 2005 DA - 2005// TI - Heparin binding sites on Ross River virus revealed by electron cryo-microscopy JO - Virology VL - 332 UR - https://doi.org/10.1016/j.virol.2004.11.043 DO - 10.1016/j.virol.2004.11.043 ID - Zhang2005 ER -