Figure 3

Data analysis menu. The three transcripts comprising the prophenoloxidase case study gene set are shown in the data analysis menu. The functional drop-down menu allows users to select their desired analysis function: display expression profiles in batch, export genomic sequences in FASTA format, or perform sequence analysis. To perform sequence analysis, an analysis program (MEME or AlignACE) and desired region to analyze (promoter, 5' UTR, 3' UTR, or cDNA) are chosen from the drop-down menus; MEME and promoters, respectively, in this case. Analysis programs are run using default parameters. If MEME is chosen as the desired analysis program, the number of motifs to search for can be specified, with five chosen in this example. AlignACE does not require specification of the number of motifs for which to search. An e-mail address may be specified for automatic notification once analysis is complete and results are ready for viewing.