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Table 1 Paired-end tags collected from three CLL samples

From: Evidences showing wide presence of small genomic aberrations in chronic lymphocytic leukemia

A. Ditag distribution in three CLL samples

 

CLL sample (%)

 

1

2

3

Total sequence reads

231,941

321,290

268,124

Total ditags

623,539

859,836

700,991

Unique ditag

272,188 (100)

320,278 (100)

307,542 (100)

Ditags common in two

99,815

99,815

 
 

87,968

 

87,968

  

108,579

108,579

Ditags common in three

51,632 (19)

51,632 (16)

51,632 (17)

B. Mapping ditags to reference human genome sequences

 

Mapped (%)

 

Unmapped (%)

Total common ditags

51,632 (100)

  

HG18

50,799 (98.3)

 

833 (1.7)

Homopolymer

22

 

816

Chimpanzee genome

195

 

616

Other human Genomes

386*

 

230

   GM15510 genome

28

  

   Celera genome

165

  

   Venter genome

352

  

   Watson genome

61

  

Total unmapped

  

230 (0.4)

  1. *These mapped to multiple genomes was counted only once.