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Table 3 Aberrations in the intergenic region

From: Evidences showing wide presence of small genomic aberrations in chronic lymphocytic leukemia

Ditag

FullL-length (bp)

CLL sample

chr.

Location

Aberration

Nearby genes

  

1

2

3

4

5

6

7

8

   

Upstream

Distance (bp)

Downstream

Distance (bp)

AAGCTTACTTTCTCGGTTCCATTACTAAGCTT

614

-

-

+

-

-

+

+

-

5q35.1

169443856-169444467

Base change

DOCK2

27,836

FOXI1

21,028

AAGCTTAGCCGGGCATCCTCTTTCCTAAGCTT

427

-

-

-

-

-

-

+

+

17q25.1

68688801-68689216

Base change

SSTR2

16,046

COG1

11,552

 

398

-

+

+

-

-

-

-

-

15q26.1

88110782-88111168

Insertion, base change

MESP1

16,678

MESP2

9,425

AAGCTTAGTTTGGCTGCATGAGACTGAAGCTT

737

-

-

+

-

-

-

-

+

16q23.1

74682385-74683114

Base change

    

AAGCTTATGATGATCCCCTGAGCTAAAAGCTT

358

+

-

-

-

-

-

-

-

1q23.3

162264795-162265148

Insertion, base change

    
 

264

+

-

-

-

-

-

-

-

5p15.33

2449552-2449774

Insertion

    

AAGCTTCAACGATAGTTCATCATCATAAGCTT

265

-

+

+

-

-

-

-

-

16p13.3

808762-808956

Base change

PRR25

4,900

LMF1

34,679

AAGCTTCAATAGCCGAAGCCAAACTAAAGCTT

556

+

+

-

-

+

+

+

-

12q15

66234005-66234554

Base change

  

DYRK2

94,467

AAGCTTCACTCAGTCATATGGCATGGAAGCTT

130

-

-

-

-

-

+

+

-

10q26.3

133154300-133154419

Insertion

    

AAGCTTCACTGCAGCTATAACACTGCAAGCTT

920

+

+

+

+

+

+

-

+

20p11.1

26157494-26158252

Insertion, base change

MIR663

20,580

  

AAGCTTCCTCTGTACTCACATTAACGAAGCTT

892

-

+

+

-

-

+

+

-

9q12

67914079-67914963

Base change

    

AAGCTTGAAATAAGTGCTGCATCCTGAAGCTT

606

+

-

-

-

-

-

-

-

1q41

220652161-220652760

Insertion, base change

    
 

252

-

-

+

-

-

-

-

+

20q13.13

46025615-46025861

Base change

    

AAGCTTGACTCATTGCGTCTTATTCTAAGCTT

1060

+

-

-

-

-

-

-

-

9q22.31

94477651-94478404

Insertion

IPPK

5,283

BICD2

35,062

AAGCTTGCACAAGGGGCCCCTTGTGCAAGCTT

606

+

-

-

-

-

-

-

-

2q35

220216964-220217558

Insertion

SLC4A3

16,038

  

AAGCTTGCAGAAGGGGAGCCAGGGTGAAGCTT

553

-

-

-

+

-

-

-

+

11q23.2

115071517-115072057

Insertion

    

AAGCTTGCTGAACGCACCTGCGTGGAAAGCTT

758

-

-

-

+

+

-

-

-

13q12.3

30403963-30404714

Insertion, base change

C13orf33

25,635

C13orf26

120

 

602

+

+

+

-

+

-

-

+

1q42.13

227318140-227318732

Insertion

    

AAGCTTGGAGCCCTAGCCACAATTGTAAGCTT

1453

-

+

-

-

+

+

+

-

13q21.33

70285628-70287080

Base change

    

AAGCTTGGCCAGAGACAGGCATCATGAAGCTT

900

+

-

+

+

-

+

-

+

6q23.2

135162469-135163363

Base change

    

AAGCTTTCACTTCATTGGAGTCAGTGAAGCTT

322

+

+

+

-

+

+

+

-

13q14.12

44367511-44367832

Base change

  

NUFIP1

43,552

AAGCTTTCCTAGGGAGCTGGGTGGTGAAGCTT

290

-

-

+

-

-

-

+

-

2q21.2

132742087-132742356

Insertion

NCRNA00164MIR663B

10,075; 10,964

  
 

120

+

-

-

-

-

-

-

-

4p15.33

14280120-14280230

Insertion, base change

    

AAGCTTTCCTTTTCCTTCTGCTCTTAAAGCTT

1071

+

-

+

-

-

+

-

-

6q27

164534304-164535365

Base change

    

AAGCTTTGCATTGGCAGAAGCCACCAAAGCTT

1039

-

+

-

-

-

-

+

-

9q12

69920049-69921093

Base change

    

AAGCTTTTAAGGGATCATGCCTCTCCAAGCTT

1534

+

-

+

-

+

+

+

-

1q21.2

148015439-148016961

Base change

  

FCGR1A

3,951

AAGCTTACCCTCTGGACGCCTGTATGAAGCTT

185

+

-

-

-

-

-

-

-

9q22.33

100893873-100893975

Insertion

  

TGFBR1

13,258

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BMC Research Notes

ISSN: 1756-0500

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