TY - JOUR AU - Mueller, S. AU - Papamichail, D. AU - Coleman, J. R. AU - Skiena, S. AU - Wimmer, E. PY - 2006 DA - 2006// TI - Reduction of the rate of poliovirus protein synthesis through large-scale codon deoptimization causes attenuation of viral virulence by lowering specific infectivity JO - Journal of virology VL - 80 UR - https://doi.org/10.1128/JVI.00738-06 DO - 10.1128/JVI.00738-06 ID - Mueller2006 ER - TY - JOUR AU - Burns, C. C. AU - Shaw, J. AU - Campagnoli, R. AU - Jorba, J. AU - Vincent, A. AU - Quay, J. AU - Kew, O. PY - 2006 DA - 2006// TI - Modulation of poliovirus replicative fitness in HeLa cells by deoptimization of synonymous codon usage in the capsid region JO - Journal of virology VL - 80 UR - https://doi.org/10.1128/JVI.80.7.3259-3272.2006 DO - 10.1128/JVI.80.7.3259-3272.2006 ID - Burns2006 ER - TY - JOUR AU - Bravo, I. G. AU - Muller, M. PY - 2005 DA - 2005// TI - Codon usage in papillomavirus genes: practical and functional aspects JO - Papillomavirus Report VL - 16 UR - https://doi.org/10.1179/095741905X24996 DO - 10.1179/095741905X24996 ID - Bravo2005 ER - TY - JOUR AU - Cladel, N. M. AU - Hu, J. AU - Balogh, K. K. AU - Christensen, N. D. PY - 2008 DA - 2008// TI - CRPV genomes with synonymous codon optimizations in the CRPV E7 gene show phenotypic differences in growth and altered immunity upon E7 vaccination JO - PLoS ONE VL - 3 UR - https://doi.org/10.1371/journal.pone.0002947 DO - 10.1371/journal.pone.0002947 ID - Cladel2008 ER - TY - JOUR AU - Karlin, S. AU - Blaisdell, B. E. AU - Schachtel, G. A. PY - 1990 DA - 1990// TI - Contrasts in codon usage of latent versus productive genes of Epstein-Barr virus: data and hypotheses JO - Journal of virology VL - 64 ID - Karlin1990 ER - TY - JOUR AU - Chumakov, K. AU - Ehrenfeld, E. PY - 2008 DA - 2008// TI - New generation of inactivated poliovirus vaccines for universal immunization after eradication of poliomyelitis JO - Clin Infect Dis VL - 47 UR - https://doi.org/10.1086/593310 DO - 10.1086/593310 ID - Chumakov2008 ER - TY - JOUR AU - Coleman, J. R. AU - Papamichail, D. AU - Skiena, S. AU - Futcher, B. AU - Wimmer, E. AU - Mueller, S. PY - 2008 DA - 2008// TI - Virus attenuation by genome-scale changes in codon pair bias JO - Science VL - 320 UR - https://doi.org/10.1126/science.1155761 DO - 10.1126/science.1155761 ID - Coleman2008 ER - TY - JOUR AU - Roy, P. AU - Boyce, M. AU - Noad, R. PY - 2009 DA - 2009// TI - Prospects for improved bluetongue vaccines JO - Nature reviews VL - 7 ID - Roy2009 ER - TY - JOUR AU - Puigbo, P. AU - Bravo, I. AU - Garcia-Vallve, S. PY - 2008 DA - 2008// TI - E-CAI: a novel server to estimate an expected value of Codon Adaptation Index (eCAI) JO - BMC Bioinformatics VL - 9 UR - https://doi.org/10.1186/1471-2105-9-65 DO - 10.1186/1471-2105-9-65 ID - Puigbo2008 ER - TY - JOUR AU - Puigbo, P. AU - Bravo, I. AU - Garcia-Vallve, S. PY - 2008 DA - 2008// TI - CAIcal: A combined set of tools to assess codon usage adaptation JO - Biology Direct VL - 3 UR - https://doi.org/10.1186/1745-6150-3-38 DO - 10.1186/1745-6150-3-38 ID - Puigbo2008 ER - TY - JOUR AU - Nakamura, Y. AU - Gojobori, T. AU - Ikemura, T. PY - 2000 DA - 2000// TI - Codon usage tabulated from international DNA sequence databases: status for the year 2000 JO - Nucleic Acids Research VL - 28 UR - https://doi.org/10.1093/nar/28.1.292 DO - 10.1093/nar/28.1.292 ID - Nakamura2000 ER - TY - JOUR AU - Sharp, P. M. AU - Li, W. H. PY - 1987 DA - 1987// TI - The codon Adaptation Index - a measure of directional synonymous codon usage bias, and its potential applications JO - Nucleic Acids Research VL - 15 UR - https://doi.org/10.1093/nar/15.3.1281 DO - 10.1093/nar/15.3.1281 ID - Sharp1987 ER - TY - JOUR AU - Wright, F. PY - 1990 DA - 1990// TI - The 'effective number of codons' used in a gene JO - Gene VL - 87 UR - https://doi.org/10.1016/0378-1119(90)90491-9 DO - 10.1016/0378-1119(90)90491-9 ID - Wright1990 ER - TY - JOUR AU - Puigbo, P. AU - Guzman, E. AU - Romeu, A. AU - Garcia-Vallve, S. PY - 2007 DA - 2007// TI - OPTIMIZER: a web server for optimizing the codon usage of DNA sequences JO - Nucleic Acids Research VL - 35 UR - https://doi.org/10.1093/nar/gkm219 DO - 10.1093/nar/gkm219 ID - Puigbo2007 ER - TY - JOUR AU - Puigbo, P. AU - Romeu, A. AU - Garcia-Vallve, S. PY - 2008 DA - 2008// TI - HEG-DB: a database of predicted highly expressed genes in prokaryotic complete genomes under translational selection JO - Nucleic Acids Research VL - 36 UR - https://doi.org/10.1093/nar/gkm831 DO - 10.1093/nar/gkm831 ID - Puigbo2008 ER -