Table 1 Newly predicted domains in the Mycoplasma gallisepticum genome.
From: Systematic search for putative new domain families in Mycoplasma gallisepticum genome
S.No. | Domain Name | Description | Full | Partial |
|---|---|---|---|---|
1. | AAA | ATPase family associated with various cellular activities | NP_853502.1 = 9-182 | - |
2. | Anticodon_1 | Anticodon-binding domain. This domain is found valyl and leucyl tRNA synthetases. It binds to the anticodon of the tRNA. | NP_852939.1 = 397-590 NP_852935.1 = 55-218 NP_853215.1 = 620-850 | - |
3. | ATP-synt_ab_C | ATP synthase alpha/beta chain, C terminal domain. | NP_853478.1 = 140-221 | - |
4. | ATP-synt_ab_N | ATP synthase alpha/beta family, beta-barrel domain | NP_853438.1 = 4-126 NP_853439.1 = 2-125 | - |
5. | BPD_transp_1 | Binding-protein-dependent transport system inner membrane component. | NP_853029.1 = 53-260 NP_853249.1 = 59-232 | - |
6. | CHASE-3 # | Cyclases/Histidine kinases Associated Sensory Extracellular) present in diverse receptor-like proteins with histidine kinase and nucleotide cyclase domains | NP_853387.1 = 55-582 | - |
7. | DUF-30 | Domain of Unknown Function 30 | NP_853479.1 = 370-770 | - |
8. | DUF-31 | Domain of Unknown Function 31 | NP_853440.1 = 220-317 NP_853441.1 = 233-337 NP_853488.1 = 220-340 | - |
9. | LMP $ | LMP repeated region. Found in the LMP group of surface-located membrane proteins of Mycoplasma hominis. | NP_853333.1 = 1260-1320, 1420-1580, 1600-1760 | - |
10. | Ferritin $ | Ferritin-like domain is one of the major non-haem iron storage proteins in animals, plants, and microorganisms | NP_852976.1 = 5-143 | - |
11. | GMP_synt_C $ | GMP synthase C terminal domain. | NP_852801.1 = 220-275 | - |
12. | Helicase_C | Helicase conserved C-terminal domain. Found in a wide variety of helicases and helicase related proteins. | NP_852813.1 = 440-530 NP_853467.1 = 660-730 | - |
13. | HGTP_anticodon | Anticodon binding domain. tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases. | NP_852966.1 = 342-423 | - |
14. | HHH # | The helix-hairpin-helix DNA-binding motif is found to be duplicated in the central domain of RuvA. | NP_853482.1 = 589-619 NP_853386.1 = 63-92, 98-127 | - |
15. | HTH_11 # | Helix-turn-helix domain present in a wide variety of proteins. | NP_853136.1 = 28-73 | - |
16. | HTH_12 # | Ribonuclease R winged-helix domain. Found found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea. | NP_853240.1 = 38-89 | - |
17. | S1 | The S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure. | NP_852895.1 = 140-210 | - |
18. | KH_1 | The K homology (KH) domain was first identified in the human heterogeneous nuclear ribonucleoprotein (hnRNP) K. It is a domain of around 70 amino acids that is present in a wide variety of quite diverse nucleic acid-binding proteins. | NP_852895.1 = 333-393 | - |
19. | Lactamase_B | Metallo-beta-lactamase superfamily. | NP_852865.1 = 40-248 | - |
20. | RMMBL | RNA-metabolising metallo-beta-lactamase. | NP_852865.1 = 320-360 | - |
21. | Lipoprotein_17 | Lipoprotein associated domain. | NP_852799.1 = 49-160 | - |
22. | MatE | Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. | NP_853011.1 = 364-530 | - |
23. | Methyltransf_3 $ | O-methyltransferase | NP_852906.1 = 7-185 | - |
24. | MFS_1 $ | Major Facilitator Superfamily | NP_852970.1 = 480-922 | - |
25. | NusB $ | The NusB protein is involved in the regulation of rRNA biosynthesis by transcriptional antitermination. | NP_853291.1 = 13-130 | - |
26. | Peptidase_M23 $ | Peptidase family M23 | NP_853190.1 = 484-657 | - |
27. | PGM_PMM_IV $ | Phosphoglucomutase/phosphomannomutae, C-terminal domain | NP_853364.1 = 481-550 | - |
28. | PTS_EIIB | phosphotransferase system, EIIB | NP_853326.1 = 47-85 | - |
29. | SBP_bac_1 $ | Bacterial extracellular solute-binding protein | NP_852821.1 = 1-385 | NP_852814.1 = 6-181 |
30. | Sigma70_r1_1 # | Sigma-70 factor, region 1.1. | NP_853171.1 = 288-342 | - |
31. | Sigma70_r1_2 $ | Sigma-70 factor, region 1.2 | NP_853171.1 = 357-398 | - |
32. | Sigma70_r4_2 $ | Sigma-70, region 4 | NP_852863.1 = 120-170 | - |
33. | TGS $ | ThrRS, GTPase, and SpoT domain. | NP_852968.1 = 417-487 | - |
34. | THUMP $ | thiouridine synthases, methylases and PSUSs domain. | NP_853282.1 = 78-170 | - |
35. | Transketolase_C | The C-terminal domain of transketolase has been proposed as a regulatory molecule binding site | NP_852812.1 = 530-641 NP_853134.1 = 138-262 | - |
36. | tRNA_anti | OB-fold nucleic acid binding domain | NP_852876.1 = 230-310 | - |
37. | VapD_N # | Virulence-associated protein D | NP_853458.1 = 7-49 | - |
38. | Lipoprotein_X | Mycoplasma MG185/MG260 protein. | - | NP_852988.1 = 247-404 NP_852899.1 = 257-414 |
39. | Lipoprotein_10 | Putative mycoplasma lipoprotein, C-terminal region | NP_852988.1 = 444-563 | - |
40. | DEAD | Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. | - | NP_852877.1 = 596-722 |
41. | ABC_membrane | ABC transporter transmembrane region. | - | NP_852786.1 = 2-126 |
42. | ABC_tran | ABC transporter | - | NP_853051.1 = 317-467 |
43. | DUF258 | Domain of Unknown Function 258 | - | NP_853404.1 = 7-104 |
44. | GTP_EFTU | - | NP_853200.1 = 68-151 | |
45. | RecO # | Recombination protein O | - | NP_853174.1 = 1-74 |
46. | SBP_bac_5 $ | - | NP_853298.1 = 461-889 | |
47. | Transposase_mut | Transposase, Mutator family | - | NP_852891.1 = 6-108 NP_853257.1 = 16-83 NP_852883.1 = 2-121 |
48. | HNH $ | HNH endonuclease | NP_853456.1 = 650-708 | - |