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Table 1 Overview of samples included in this study

From: Opening the archives for state of the art tumour genetic research: sample processing for array-CGH using decalcified, formalin-fixed, paraffin-embedded tissue-derived DNA samples

Sample ID Diagnosis Collection date Material Cellularity Extracellular matrix Decalcification
1 Rare chondrosarcoma 2004 dFFPE High Low Formic acid
2 Rare chondrosarcoma 2007 dFFPE High Low Formic acid
3 Rare chondrosarcoma 2007 dFFPE Low High Formic acid
4 Rare chondrosarcoma 1996 dFFPE Low High Formic acid
5 Rare chondrosarcoma 1997 dFFPE High Low Formic acid
6 Rare chondrosarcoma 2005 dFFPE Low High Formic acid
7 Rare chondrosarcoma 2005 dFFPE High Low Formic acid
8 Rare chondrosarcoma 2004 dFFPE Moderate Moderate Formic acid
9 Rare chondrosarcoma 2006 dFFPE Moderate Moderate Formic acid
10 Rare chondrosarcoma 2000 dFFPE Moderate Moderate Formic acid
11 Rare chondrosarcoma 1996 dFFPE Moderate Moderate Formic acid
12 Rare chondrosarcoma NA dFFPE High Moderate Formic acid
13 Rare chondrosarcoma NA dFFPE High Moderate Formic acid
14 Rare chondrosarcoma 1994 dFFPE High Moderate Formic acid
15 Rare chondrosarcoma NA dFFPE High Moderate Formic acid
16 Rare chondrosarcoma 2007 dFFPE High Moderate Formic acid
17 Rare chondrosarcoma NA dFFPE High Moderate Formic acid
18 Rare chondrosarcoma 2001 dFFPE High Moderate Formic acid
19 Rare chondrosarcoma 1994 dFFPE High Moderate Formic acid
20 Rare chondrosarcoma 1996 dFFPE High Moderate Formic acid
21* Rare chondrosarcoma 2000 Frozen Moderate Moderate None
22** Rare chondrosarcoma 1996 Frozen Moderate Moderate None
23 Chondrosarcoma 2001 Frozen High High None
24 Chondrosarcoma 2003 Frozen low High None
25 Primary angiosarcoma 2007 Frozen High Low None
26 Primary angiosarcoma NA dFFPE High Low Formic acid
27 Primary angiosarcoma 2007 dFFPE High Low Formic acid
28 Primary angiosarcoma 2007 FFPE High Low None
29 Primary angiosarcoma NA FFPE High Low None
30 Primary angiosarcoma 2007 FFPE High Low None
31 Primary angiosarcoma NA dFFPE High Low Formic acid
32 Chondrosarcoma 1990 dFFPE Low High Formic acid
  1. * Corresponding frozen sample Nr 10.
  2. ** Corresponding frozen sample Nr 11.
  3. ***NA: not available